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hagis-3.1.0.zip

openplantpathology-hagis-7584030
- .Rbuildignore 231 Bytes
- .github
  - CONTRIBUTING.md 2.5 kB
  - issue_template.md 609 Bytes
  - pull_request_template.md 937 Bytes
  - workflows
    - tic.yml 4.9 kB
    - update-tic.yml 1.6 kB
- .gitignore 95 Bytes
- CODE_OF_CONDUCT.md 1.4 kB
- DESCRIPTION 2.4 kB
- Hagis.Rproj 303 Bytes
- LICENSE 42 Bytes
- LICENSE.md 1.1 kB
- NAMESPACE 630 Bytes
- NEWS.md 2.2 kB
- R
  - calculate_complexities.R 11.0 kB
  - calculate_diversities.R 9.4 kB
  - create_binary_matrix.R 2.0 kB
  - data.R 1.9 kB
  - hagis-package.R 202 Bytes
  - internal_functions.R 2.4 kB
  - summarize_gene.R 6.2 kB
  - zzz.R 28 Bytes
- README.md 4.9 kB
- _pkgdown.yml 44 Bytes
- codecov.yml 176 Bytes
- codemeta.json 10.2 kB
- cran-comments.md 650 Bytes
- data
  - P_sojae_survey.rda 2.0 kB
  - sample_meta.rda 216 Bytes
- inst
  - CITATION 2.1 kB
  - paper
    - author-info-blocks.lua 6.0 kB
    - molecular-plant-microbe-interactions.csl 6.0 kB
    - paper.Rmd 7.3 kB
    - paper.docx 20.4 kB
    - references.bib 5.9 kB
    - scholarly-metadata.lua 5.8 kB
    - template.docx 18.3 kB
- man
  - P_sojae_survey.Rd 1.3 kB
  - autoplot.hagis.complexities.Rd 2.0 kB
  - autoplot.hagis.gene.summary.Rd 1.6 kB
  - calculate_complexities.Rd 1.9 kB
  - calculate_diversities.Rd 3.1 kB
  - create_binary_matrix.Rd 1.6 kB
  - diversities_table.Rd 1.4 kB
  - hagis-package.Rd 1.8 kB
  - individual_pathotypes.Rd 1.5 kB
  - reexports.Rd 407 Bytes
  - sample_meta.Rd 784 Bytes
  - summarize_gene.Rd 1.7 kB
- tests
  - figs
    - deps.txt 67 Bytes
    - plot-hagis-complexities
      - count-complexities-asc-blue.svg 11.5 kB
      - count-complexities.svg 11.5 kB
      - perc-complexities-asc-blue.svg 11.5 kB
      - perc-complexities-blue.svg 11.5 kB
      - perc-complexities-desc-blue.svg 11.5 kB
      - perc-complexities.svg 11.5 kB
    - plot-hagis-gene-summary
      - count-summary-asc-blue.svg 12.6 kB
      - count-summary.svg 12.6 kB
      - perc-summary-asc-blue.svg 12.6 kB
      - perc-summary-blue.svg 12.6 kB
      - perc-summary-des-blue.svg 12.6 kB
      - perc-summary.svg 12.6 kB
  - testthat
    - test-autoplot_hagis_complexities.R 1.8 kB
    - test-autoplot_rps_summary.R 1.4 kB
    - test-calculate_complexities.R 4.3 kB
    - test-calculate_diversities.R 4.5 kB
    - test-create_binary_matrix.R 733 Bytes
    - test-diversities_table.R 982 Bytes
    - test-individual_pathotypes.R 948 Bytes
  - testthat.R 70 Bytes
- tic.R 274 Bytes
- vignettes
  - betadiversity.Rmd 11.7 kB
  - hagis.Rmd 12.0 kB