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funannotate-v1.8.1.zip

nextgenusfs-funannotate-d5c4f2d
- .github
  - ISSUE_TEMPLATE
    - bug_report.md 490 Bytes
- .gitignore 65 Bytes
- LICENSE.md 1.3 kB
- MANIFEST.in 315 Bytes
- README.md 1.6 kB
- docs
  - .gitignore 28 Bytes
  - Makefile 608 Bytes
  - annotate.rst 9.3 kB
  - commands.rst 41.6 kB
  - compare.rst 2.1 kB
  - conda.rst 7.3 kB
  - conf.py 5.2 kB
  - databases.rst 2.8 kB
  - dependencies.rst 3.0 kB
  - docker.rst 3.3 kB
  - evidence.rst 1.9 kB
  - index.rst 1.6 kB
  - install.rst 1.8 kB
  - make.bat 815 Bytes
  - manual.rst 461 Bytes
  - predict.rst 13.1 kB
  - prepare.rst 4.7 kB
  - tutorials.rst 12.1 kB
  - update.rst 4.8 kB
  - utilities.rst 5.5 kB
- funannotate
  - __init__.py 36 Bytes
  - __version__.py 63 Bytes
  - annotate.py 71.5 kB
  - aux_scripts
    - augustus_parallel.py 6.8 kB
    - enrichment_parallel.py 2.7 kB
    - fasta2agp.pl 3.8 kB
    - filterGenemark.pl 21.2 kB
    - filterIntronsFindStrand.pl 5.7 kB
    - funannotate-BUSCO2-py2.py 144.3 kB
    - funannotate-BUSCO2.py 144.4 kB
    - funannotate-p2g.py 14.2 kB
    - funannotate-runEVM.py 20.7 kB
    - genemark_gtf2gff3.pl 4.6 kB
    - getEggNog.sh 642 Bytes
    - hmmer_parallel.py 8.0 kB
    - iprscan-local.py 14.1 kB
    - iprscan2annotations.py 3.2 kB
    - pal2nal.pl 65.9 kB
    - phobius-multiproc.py 3.8 kB
    - phobius-remote.pl 35.3 kB
    - runIPRscan.py 15.3 kB
    - sam2bam.sh 389 Bytes
    - tbl2asn_parallel.py 9.4 kB
    - trinity.py 8.6 kB
    - trnascan2gff3.pl 5.5 kB
    - xmlcombine.py 723 Bytes
  - check.py 17.1 kB
  - clean.py 8.1 kB
  - compare.py 58.9 kB
  - config
    - EOG092C0B3U.prfl 121.9 kB
    - TruSeq3-PE.fa 93 Bytes
    - TruSeq3-SE.fa 119 Bytes
    - busco_test.fa 3.8 kB
    - codeml.config 1.4 kB
    - extrinsic.E.XNT.RM.cfg 2.5 kB
    - smcogs.txt 12.7 kB
    - test.sbt 1.5 kB
    - tf_interpro.txt 1.2 kB
  - database.py 2.3 kB
  - downloads.json 4.3 kB
  - fix.py 7.2 kB
  - html_template
    - css
      - bootstrap.min.css 121.3 kB
      - starter-template.css 291 Bytes
    - js
      - bootstrap.min.js 36.9 kB
      - ie-emulation-modes-warning.js 2.1 kB
      - ie10-viewport-bug-workaround.js 641 Bytes
      - jquery.min.js 96.0 kB
  - interlap.py 8.6 kB
  - iprscan.py 449 Bytes
  - library.py 386.0 kB
  - mask.py 8.9 kB
  - outgroups.py 5.1 kB
  - predict.py 100.8 kB
  - remote.py 14.9 kB
  - resources.py 11.2 kB
  - setupDB.py 31.2 kB
  - sort.py 2.8 kB
  - species.py 6.6 kB
  - stackedBarGraph.py 12.3 kB
  - test.py 18.4 kB
  - train.py 59.0 kB
  - update.py 120.8 kB
  - utilities
    - __init__.py 0 Bytes
    - bam2gff3.py 943 Bytes
    - contrast.py 51.6 kB
    - gbk2parts.py 1.3 kB
    - gff2prot.py 1.6 kB
    - gff2tbl.py 18.5 kB
    - quarry2gff3.py 3.2 kB
    - stats.py 2.2 kB
    - stringtie2gff3.py 4.0 kB
    - tbl2gbk.py 7.0 kB
- funannotate-logo.png 12.1 kB
- scripts
  - funannotate 32.1 kB
- setup.py 3.9 kB