Published September 27, 2020
| Version v1.5.1
Software
Open
nextgenusfs/amptk: amptk v1.5.1
- 1. @RedVentures
- 2. University of California-Riverside
- 3. IPAE
Description
- to support OSX Catalina dropping 32-bit applications, I've removed
usearch9
as a strict dependency.vsearch
will be the default for all processing steps, including taxonomy assignment. Along these lines, I've dropped UTAX classifier as "default" in the hybrid taxonomy method. - dropping usearch, required addition of a few new dependencies:
mafft
,fasttree
, and the python packagepyfastx
(for speed simplicity). - added support for PacBio CCS reads. Reads can be processed with
amptk pacbio
and then clustering withamptk pb-dada2
- several bug fixes
- fix embarrassing typos in v1.5.0 -- do not use v1.5.0 its broken.
- apparently it does not work in python 3.8 -- investigating that for future release/support.
- working on ONT (Oxford Nanopore) support as well -- stay tuned for this in near future.
Files
nextgenusfs/amptk-v1.5.1.zip
Files
(2.4 MB)
Name | Size | Download all |
---|---|---|
md5:efd58637e76d01146a318940664151cc
|
2.4 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/nextgenusfs/amptk/tree/v1.5.1 (URL)