Dataset	Protein IDs	Protein Names	Majority protein IDs	Peptide counts (all)	Peptide counts (razor+unique)	Peptide counts (unique)	Fasta headers	Number of proteins	Sequence coverage SARS_COV_2 [%]	Sequence coverage [%]	Intensity	Intensity SARS_COV_2	Mol. weight [kDa]	Score	iBAQ	iBAQ%	MS/MS count	Only identified by site
Bezstarosti	YP_009724397.2	nucleocapsid phosphoprotein	YP_009724397.2	59	59	59	YP_009724397.2 nucleocapsid phosphoprotein [Severe acute respiratory syndrome coronavirus 2]	1	8.93E+01		4.16E+11	4.16E+11			15391000000	1	468	
Bezstarosti	YP_009724393.1	membrane glycoprotein	YP_009724393.1	13	13	13	YP_009724393.1 membrane glycoprotein [Severe acute respiratory syndrome coronavirus 2]	1	3.60E+01		1.99E+10	1.99E+10			1533700000	0.099649146	44	
Bezstarosti	YP_009724391.1	ORF3a protein	YP_009724391.1	9	9	9	YP_009724391.1 ORF3a protein [Severe acute respiratory syndrome coronavirus 2]	1	2.80E+01		2.05E+09	2.05E+09			341860000	0.022211682	31	
Bezstarosti	ORF9b__NC_045512.2_28284-28574	ORF9b	ORF9b__NC_045512.2_28284-28574	13	13	1	ORF9b__NC_045512.2_28284-28574	1	9.59E+01		2.75E+09	2.75E+09			305340000	0.019838867	37	
Bezstarosti	YP_009724390.1	surface glycoprotein	YP_009724390.1	40	40	40	YP_009724390.1 surface glycoprotein [Severe acute respiratory syndrome coronavirus 2]	1	3.40E+01		1.68E+10	1.68E+10			284650000	0.018494575	91	
Bezstarosti	YP_009724395.1	ORF7a protein	YP_009724395.1	1	1	1	YP_009724395.1 ORF7a protein [Severe acute respiratory syndrome coronavirus 2]	1	5.00E+00		8.63E+08	8.63E+08			143830000	0.009345072	2	
Bezstarosti	YP_009724394.1	ORF6 protein	YP_009724394.1	2	2	2	YP_009724394.1 ORF6 protein [Severe acute respiratory syndrome coronavirus 2]	1	3.11E+01		3.08E+08	3.08E+08			76877000	0.004994932	8	
Bezstarosti	YP_009724396.1	ORF8 protein	YP_009724396.1	1	1	1	YP_009724396.1 ORF8 protein [Severe acute respiratory syndrome coronavirus 2]	1	5		67922000	67922000			13584000	0.000882594	0	
Bezstarosti	YP_009724389.1;YP_009725295.1	ORF1ab polyprotein	YP_009724389.1;YP_009725295.1	99;89	99;89	99;89	YP_009724389.1 orf1ab polyprotein [Severe acute respiratory syndrome coronavirus 2];YP_009725295.1 orf1a polyprotein [Severe acute respiratory syndrome coronavirus 2]	2	1.94E+01		4.58E+09	4.58E+09			12013000	0.000780521	144	
Bezstarosti	YP_009724392.1	envelope protein	YP_009724392.1	1	1	1	YP_009724392.1 envelope protein [Severe acute respiratory syndrome coronavirus 2]	1	16		35969000	35969000			8992300	0.000584257	1	
Bezstarosti	9b_shorter_28305_28574	ORF9b-short_form	9b_shorter_28305_28574	13	1	1	9b_shorter_28305_28574	1	100		8642600	8642600			9.60E+05	6.24E-05	1	
Davidson	YP_009724397.2	nucleocapsid phosphoprotein		66	66	66	YP_009724397.2 nucleocapsid phosphoprotein [Severe acute respiratory syndrome coronavirus 2]	1	88.3	88.3			45.625	323.31	9.99E+10	1	3298	
Davidson	YP_009724393.1	membrane glycoprotein		17	17	17	YP_009724393.1 membrane glycoprotein [Severe acute respiratory syndrome coronavirus 2]	1	52.3	52.3			25.146	323.31	1.79E+10	0.179731	370	
Davidson	YP_009724390.1	surface glycoprotein		73	73	73	YP_009724390.1 surface glycoprotein [Severe acute respiratory syndrome coronavirus 2]	1	54.4	54.4			141.18	323.31	6.07E+09	0.060812	1414	
Davidson	ORF9b__NC_045512.2_28284-28574;9b_shorter_28305_28574	ORF9b and ORF9b-short_form		13;11	13;11	13;11	ORF9b__NC_045512.2_28284-28574;9b_shorter_28305_28574	2	99	99			10.797	323.31	5.03E+09	0.050364	58	
Davidson	YP_009725318.1	ORF7b		1	1	1	YP_009725318.1 ORF7b [Severe acute respiratory syndrome coronavirus 2]	1	23.3	23.3			5.1802	-2	2.00E+09	0.020054	2	+
Davidson	YP_009724391.1	ORF3a protein		10	10	10	YP_009724391.1 ORF3a protein [Severe acute respiratory syndrome coronavirus 2]	1	45.8	45.8			31.123	323.31	1.08E+09	0.01077	126	
Davidson	YP_009724394.1	ORF6 protein		3	3	3	YP_009724394.1 ORF6 protein [Severe acute respiratory syndrome coronavirus 2]	1	42.6	42.6			7.2725	323.31	5.62E+08	0.00563	10	
Davidson	YP_009724395.1	ORF7a protein		2	2	2	YP_009724395.1 ORF7a protein [Severe acute respiratory syndrome coronavirus 2]	1	22.3	22.3			13.744	323.31	2.16E+08	0.002165	15	
Davidson	YP_009724389.1;YP_009725295.1	ORF1ab polyprotein		218;161	218;161	218;161	YP_009724389.1 orf1ab polyprotein [Severe acute respiratory syndrome coronavirus 2];YP_009725295.1 orf1a polyprotein [Severe acute respiratory syndrome coronavirus 2]	2	36.3	36.3			794.05	323.31	1.71E+08	0.001709	1247	
Davidson	YP_009724396.1	ORF8 protein		5	5	5	YP_009724396.1 ORF8 protein [Severe acute respiratory syndrome coronavirus 2]	1	35.5	35.5			13.831	212.35	1.30E+08	0.001305	18	
Davidson	NC_045512.2_2457-2290	candidate-from-permutation-analysis		2	2	2	NC_045512.2_2457-2290	1	27.3	27.3			6.1342	-2	28982000	0.00029	3	+
Davidson	YP_009724392.1	envelope protein		1	1	1	YP_009724392.1 envelope protein [Severe acute respiratory syndrome coronavirus 2]	1	16	16			8.3649	3.3448	1460000	1.46E-05	1