Software Open Access

ms609/TreeTools: v1.3.0

Martin R. Smith

New functions

  • SisterSize() and RootNodeDist() measure sister-clade size and root-node distance.
  • MSTEdges(): Edges of minimum spanning tree.
  • SplitImbalance(): how balanced is each split?
  • New C++ functions root_on_node() and root_binary() to root trees quickly and robustly.
Enhancements
  • TNTReadTree() handles additional punctuation characters.

  • Import RdMacros package 'Rdpack'.

  • C++ implementation of TipsInSplits().

  • Export C++ functions preorder_edges_and_nodes() and postorder_edges().
  • Remove obsolete copy of C++ code from 'phangorn'.

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Publication date:
September 22, 2020
DOI:
10.5281/zenodo.4044253

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10.5281/zenodo.4044253

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Versions

Version 1.3.0 10.5281/zenodo.4044253 Sep 22, 2020
Version 1.2.0 10.5281/zenodo.4008377 Aug 30, 2020
Version 1.1.0 10.5281/zenodo.3933253 Jul 7, 2020
Version 1.0.0 10.5281/zenodo.3885457 Jun 8, 2020
Version 0.2.0-failing 10.5281/zenodo.3831743 May 18, 2020
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