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Description: Contains a StarDist example training dataset, a test dataset, and the StarDist model generated using ZeroCostDL4Mic (see https://github.com/HenriquesLab/ZeroCostDL4Mic/wiki/Stardist)
\n\nTraining dataset: Paired microscopy images (brightfield) and corresponding masks
\n\nMicroscopy data type: brightfield microscopy and masks obtained via manual segmentation (see https://github.com/HenriquesLab/ZeroCostDL4Mic/wiki/Stardist for details about the segmentation)
\n\nMicroscope: Images were acquired with a brightfield microscope (Zeiss Laser-TIRF 3 Imaging System, Carl Zeiss) and a 10X objective.
\n\nFile format: .tif (8-bit for brightfield images and 8 and 16-bit for the masks)
\n\nImage size: 1024x1024 (Pixel size: 650 nm)
", "publication_date": "2020-09-17", "publisher": "Zenodo", "resource_type": { "id": "dataset", "title": { "de": "Datensatz", "en": "Dataset" } }, "rights": [ { "description": { "en": "The Creative Commons Attribution license allows re-distribution and re-use of a licensed work on the condition that the creator is appropriately credited." }, "icon": "cc-by-icon", "id": "cc-by-4.0", "props": { "scheme": "spdx", "url": "https://creativecommons.org/licenses/by/4.0/legalcode" }, "title": { "en": "Creative Commons Attribution 4.0 International" } } ], "title": "Combining StarDist and TrackMate example 3 - Flow chamber dataset", "version": "1" }, "parent": { "access": { "owned_by": { "user": 136097 } }, "communities": {}, "id": "4034938", "pids": { "doi": { "client": "datacite", "identifier": "10.5281/zenodo.4034938", "provider": "datacite" } } }, "pids": { "doi": { "client": "datacite", "identifier": "10.5281/zenodo.4034939", "provider": "datacite" }, "oai": { "identifier": "oai:zenodo.org:4034939", "provider": "oai" } }, "revision_id": 2, "stats": { "all_versions": { "data_volume": 24079254821.0, "downloads": 67, "unique_downloads": 57, "unique_views": 463, "views": 518 }, "this_version": { "data_volume": 24079254821.0, "downloads": 67, "unique_downloads": 57, "unique_views": 460, "views": 515 } }, "status": "published", "updated": "2020-09-18T00:59:26.814096+00:00", "versions": { "index": 1, "is_latest": true } }