10.5281/zenodo.4034939
https://zenodo.org/records/4034939
oai:zenodo.org:4034939
Gautier Follain
Gautier Follain
Faculty of Science and Engineering, Cell Biology, Åbo Akademi University, 20520 Turku, Finland
Guillaume Jacquemet
Guillaume Jacquemet
Faculty of Science and Engineering, Cell Biology, Åbo Akademi University, 20520 Turku, Finland
Combining StarDist and TrackMate example 3 - Flow chamber dataset
Zenodo
2020
2020-09-17
10.5281/zenodo.4034938
1
Creative Commons Attribution 4.0 International
Description: Contains a StarDist example training dataset, a test dataset, and the StarDist model generated using ZeroCostDL4Mic (see https://github.com/HenriquesLab/ZeroCostDL4Mic/wiki/Stardist)
Training dataset: Paired microscopy images (brightfield) and corresponding masks
Microscopy data type: brightfield microscopy and masks obtained via manual segmentation (see https://github.com/HenriquesLab/ZeroCostDL4Mic/wiki/Stardist for details about the segmentation)
Microscope: Images were acquired with a brightfield microscope (Zeiss Laser-TIRF 3 Imaging System, Carl Zeiss) and a 10X objective.
File format: .tif (8-bit for brightfield images and 8 and 16-bit for the masks)
Image size: 1024x1024 (Pixel size: 650 nm)