Published April 1, 2022 | Version 1
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READemption folder for Grad-seq analysis of Pseudomonas PAO1 and phiKZ

Creators

  • 1. Institute for Molecular Infection Biology, University of Würzburg, Würzburg
  • 2. Helmholtz Institute for RNA-based Infection Research, Würzburg; Institute for Molecular Infection Biology, University of Würzburg, Würzburg

Description

The READemption analysis folder for the Grad-seq analysis of Pseudomonas and additionally at infected conditions with bacteriophage phiKZ.

IMPORTANT: The FASTQ files need to be downloaded in the folder /input/reads that are accessible from GEO: GSE157708.

fyi: /output/deseq and -/viz* folders are empty

more information about READemption: https://reademption.readthedocs.io/en/latest/index.html

Files

Files (51.3 GB)

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md5:16d4af2fa44bbf20218d22a1e415bb5d
51.3 GB Download

Additional details

References

  • Gerovac et al. (2021) mBio