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projectglow/glow: v0.6.0

Karen Feng; Henry Davidge; Kiavash Kianfar; williambrandler; Ahir Reddy; Amir Kermany; Boris Boutkov; Frank Austin Nothaft; Herman van Hovell; Leland; Michael L Heuer

We are excited to announce the release of Glow 0.6.0. This release includes both Java/Scala and Python artifacts that can be found in Maven Central and PyPI, respectively. Please note that the name of Maven Artifacts has changed from glow to glow-spark3 and glow-spark2 as glow is now released for both versions of Spark.

Notable additions/changes are:

  • #245 Added GloWGR for binary traits
  • #240 Input validation for GloWGR
  • #242 transform_loco function for RidgeRegression, which applies the fitted model in a leave-one-chromosome-out to get phenotype predictors for each chromosome
  • #243 reshape_for_gwas convenience function to prepare the output of GloWGR for use in glow GWAS functions
  • #285 Improved performance of lift_over_variants transformer
  • #249 Faster conversion form python double array to java array
  • #276 Added support for reading uncompressed or zstd compressed BGEN files
  • #254 , #291 Feature to cross release for Spark 3 and Spark 2
  • #258 Fixed error in python literal conversion
  • #264 Fixed splitability state of non-compressed VCFs
  • #271, #281 Minor fixes to GloWGR
  • #247, #250, #252, #273, #275, #279, #287 Documentation, notebook, and blog improvements
  • Other minor fixes

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