Software Open Access

danlwarren/ENMTools: ENMTools 1.0.1

Dan Warren; Russell Dinnage; Nicholas J. Matzke; Nicholas Huron; John Baumgartner

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    <subfield code="u">University of Melbourne</subfield>
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    <subfield code="a">&lt;p&gt;This is the first post-CRAN update to ENMTools, which fixes a few minor issues and adds some useful new features.&lt;/p&gt;
&lt;li&gt;Added variable importance tests via interface with the &lt;em&gt;vip&lt;/em&gt; package&lt;/li&gt;
&lt;li&gt;Added clamping for the &lt;em&gt;predict&lt;/em&gt; functions, including plots of where
clamping is happening&lt;/li&gt;
&lt;li&gt;Added clamping for model construction functions, with a TRUE/FALSE
switch defaulting to TRUE&lt;/li&gt;
&lt;li&gt;Changed naming conventions for &lt;em&gt;predict&lt;/em&gt; functions so that the
suitability raster is in the $suitability slot, just as with
modeling functions&lt;/li&gt;
&lt;li&gt;Added progress bars for a lot of tests&lt;/li&gt;
&lt;li&gt;Added "verbose" option for a lot of functions, defaulting to FALSE&lt;/li&gt;
Bug fixes
&lt;li&gt;Added some code to fix a bug with recalibration. Basically
CalibratR's call to parallel was tanking on Mac OS, and there's just
a little code snippet that needed to be added to the call to make
that work.&lt;/li&gt;
&lt;li&gt;Fixed interactive.plot generic and moved the function to its own
file to make it easier to extend&lt;/li&gt;
&lt;li&gt;Temporarily suppressing some warnings coming out of &lt;em&gt;leaflet&lt;/em&gt; that
are being produced by the recent &lt;em&gt;rgdal&lt;/em&gt; changes&lt;/li&gt;
&lt;li&gt;Fixed background sampling code to resample when necessary&lt;/li&gt;
&lt;li&gt;Changed &lt;em&gt;enmtools.ranger&lt;/em&gt; demo code to actually use &lt;em&gt;ranger&lt;/em&gt; instead
of &lt;em&gt;rf&lt;/em&gt;&lt;/li&gt;
&lt;li&gt;Fixed code for calculating p values for some of the hypothesis
tests, the old code was getting wrong answers when there were
repeated values&lt;/li&gt;
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