Software Open Access

danlwarren/ENMTools: ENMTools 1.0.1

Dan Warren; Russell Dinnage; Nicholas J. Matzke; Nicholas Huron; John Baumgartner


DataCite XML Export

<?xml version='1.0' encoding='utf-8'?>
<resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://datacite.org/schema/kernel-4" xsi:schemaLocation="http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4.1/metadata.xsd">
  <identifier identifierType="DOI">10.5281/zenodo.4005095</identifier>
  <creators>
    <creator>
      <creatorName>Dan Warren</creatorName>
    </creator>
    <creator>
      <creatorName>Russell Dinnage</creatorName>
      <affiliation>Australian National University</affiliation>
    </creator>
    <creator>
      <creatorName>Nicholas J. Matzke</creatorName>
      <affiliation>The Australian National University</affiliation>
    </creator>
    <creator>
      <creatorName>Nicholas Huron</creatorName>
      <affiliation>Temple University</affiliation>
    </creator>
    <creator>
      <creatorName>John Baumgartner</creatorName>
      <affiliation>University of Melbourne</affiliation>
    </creator>
  </creators>
  <titles>
    <title>danlwarren/ENMTools: ENMTools 1.0.1</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2020</publicationYear>
  <dates>
    <date dateType="Issued">2020-08-28</date>
  </dates>
  <resourceType resourceTypeGeneral="Software"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/4005095</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsSupplementTo">https://github.com/danlwarren/ENMTools/tree/v1.0.1</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.3268813</relatedIdentifier>
  </relatedIdentifiers>
  <version>v1.0.1</version>
  <rightsList>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;This is the first post-CRAN update to ENMTools, which fixes a few minor issues and adds some useful new features.&lt;/p&gt;
Enhancements
&lt;ul&gt;
&lt;li&gt;Added variable importance tests via interface with the &lt;em&gt;vip&lt;/em&gt; package&lt;/li&gt;
&lt;li&gt;Added clamping for the &lt;em&gt;predict&lt;/em&gt; functions, including plots of where
clamping is happening&lt;/li&gt;
&lt;li&gt;Added clamping for model construction functions, with a TRUE/FALSE
switch defaulting to TRUE&lt;/li&gt;
&lt;li&gt;Changed naming conventions for &lt;em&gt;predict&lt;/em&gt; functions so that the
suitability raster is in the $suitability slot, just as with
modeling functions&lt;/li&gt;
&lt;li&gt;Added progress bars for a lot of tests&lt;/li&gt;
&lt;li&gt;Added "verbose" option for a lot of functions, defaulting to FALSE&lt;/li&gt;
&lt;/ul&gt;
Bug fixes
&lt;ul&gt;
&lt;li&gt;Added some code to fix a bug with recalibration. Basically
CalibratR's call to parallel was tanking on Mac OS, and there's just
a little code snippet that needed to be added to the call to make
that work.&lt;/li&gt;
&lt;li&gt;Fixed interactive.plot generic and moved the function to its own
file to make it easier to extend&lt;/li&gt;
&lt;li&gt;Temporarily suppressing some warnings coming out of &lt;em&gt;leaflet&lt;/em&gt; that
are being produced by the recent &lt;em&gt;rgdal&lt;/em&gt; changes&lt;/li&gt;
&lt;li&gt;Fixed background sampling code to resample when necessary&lt;/li&gt;
&lt;li&gt;Changed &lt;em&gt;enmtools.ranger&lt;/em&gt; demo code to actually use &lt;em&gt;ranger&lt;/em&gt; instead
of &lt;em&gt;rf&lt;/em&gt;&lt;/li&gt;
&lt;li&gt;Fixed code for calculating p values for some of the hypothesis
tests, the old code was getting wrong answers when there were
repeated values&lt;/li&gt;
&lt;/ul&gt;</description>
  </descriptions>
</resource>
393
157
views
downloads
All versions This version
Views 3938
Downloads 1571
Data volume 1.3 GB11.2 MB
Unique views 3478
Unique downloads 1271

Share

Cite as