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danlwarren/ENMTools: ENMTools 1.0.1

Dan Warren; Russell Dinnage; Nicholas J. Matzke; Nicholas Huron; John Baumgartner


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    <dct:description>&lt;p&gt;This is the first post-CRAN update to ENMTools, which fixes a few minor issues and adds some useful new features.&lt;/p&gt; Enhancements &lt;ul&gt; &lt;li&gt;Added variable importance tests via interface with the &lt;em&gt;vip&lt;/em&gt; package&lt;/li&gt; &lt;li&gt;Added clamping for the &lt;em&gt;predict&lt;/em&gt; functions, including plots of where clamping is happening&lt;/li&gt; &lt;li&gt;Added clamping for model construction functions, with a TRUE/FALSE switch defaulting to TRUE&lt;/li&gt; &lt;li&gt;Changed naming conventions for &lt;em&gt;predict&lt;/em&gt; functions so that the suitability raster is in the $suitability slot, just as with modeling functions&lt;/li&gt; &lt;li&gt;Added progress bars for a lot of tests&lt;/li&gt; &lt;li&gt;Added "verbose" option for a lot of functions, defaulting to FALSE&lt;/li&gt; &lt;/ul&gt; Bug fixes &lt;ul&gt; &lt;li&gt;Added some code to fix a bug with recalibration. Basically CalibratR's call to parallel was tanking on Mac OS, and there's just a little code snippet that needed to be added to the call to make that work.&lt;/li&gt; &lt;li&gt;Fixed interactive.plot generic and moved the function to its own file to make it easier to extend&lt;/li&gt; &lt;li&gt;Temporarily suppressing some warnings coming out of &lt;em&gt;leaflet&lt;/em&gt; that are being produced by the recent &lt;em&gt;rgdal&lt;/em&gt; changes&lt;/li&gt; &lt;li&gt;Fixed background sampling code to resample when necessary&lt;/li&gt; &lt;li&gt;Changed &lt;em&gt;enmtools.ranger&lt;/em&gt; demo code to actually use &lt;em&gt;ranger&lt;/em&gt; instead of &lt;em&gt;rf&lt;/em&gt;&lt;/li&gt; &lt;li&gt;Fixed code for calculating p values for some of the hypothesis tests, the old code was getting wrong answers when there were repeated values&lt;/li&gt; &lt;/ul&gt;</dct:description>
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