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danlwarren/ENMTools: ENMTools 1.0.1

Dan Warren; Russell Dinnage; Nicholas J. Matzke; Nicholas Huron; John Baumgartner

This is the first post-CRAN update to ENMTools, which fixes a few minor issues and adds some useful new features.

  • Added variable importance tests via interface with the vip package
  • Added clamping for the predict functions, including plots of where clamping is happening
  • Added clamping for model construction functions, with a TRUE/FALSE switch defaulting to TRUE
  • Changed naming conventions for predict functions so that the suitability raster is in the $suitability slot, just as with modeling functions
  • Added progress bars for a lot of tests
  • Added "verbose" option for a lot of functions, defaulting to FALSE
Bug fixes
  • Added some code to fix a bug with recalibration. Basically CalibratR's call to parallel was tanking on Mac OS, and there's just a little code snippet that needed to be added to the call to make that work.
  • Fixed interactive.plot generic and moved the function to its own file to make it easier to extend
  • Temporarily suppressing some warnings coming out of leaflet that are being produced by the recent rgdal changes
  • Fixed background sampling code to resample when necessary
  • Changed enmtools.ranger demo code to actually use ranger instead of rf
  • Fixed code for calculating p values for some of the hypothesis tests, the old code was getting wrong answers when there were repeated values
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