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ahmedmagds/GNUVID: GNUVID v1.4: Globally circulating clonal complexes as of 2020-08-17

Ahmed M Moustafa

  • 32719 GISAID sequences have been included in this analysis.

  • GNUVID compressed the 327190 ORFs in the 32719 genomes to 19224 unique alleles.

  • 17615 Sequence Types (STs) have been assigned in this dataset and were clustered in 70 clonal complexes (CCs).

  • 11 new CCs have been assigned.

  • 54 CCs have been Inactive (i.e. Last time seen more than 1 month before 2020-08-17).

  • 12 CCs have gone Quiet (i.e. Last seen 2-4 weeks before 2020-08-17).

  • 4 CCs have been Active (i.e. Last seen within the 2 weeks before 2020-08-17).

  • CC70, CC26, CC343, CC927, CC1434 and CC13202 have now been called CC550, CC750, CC9999, CC1179, CC2175 and CC13208 respectively.

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