Software Open Access
Ahmed M Moustafa
32719 GISAID sequences have been included in this analysis.
GNUVID compressed the 327190 ORFs in the 32719 genomes to 19224 unique alleles.
17615 Sequence Types (STs) have been assigned in this dataset and were clustered in 70 clonal complexes (CCs).
11 new CCs have been assigned.
54 CCs have been Inactive (i.e. Last time seen more than 1 month before 2020-08-17).
12 CCs have gone Quiet (i.e. Last seen 2-4 weeks before 2020-08-17).
4 CCs have been Active (i.e. Last seen within the 2 weeks before 2020-08-17).
CC70, CC26, CC343, CC927, CC1434 and CC13202 have now been called CC550, CC750, CC9999, CC1179, CC2175 and CC13208 respectively.