Software Open Access

OpenGDC

Cumbo, Fabio; Cappelli, Eleonora; Bernasconi, Anna; Canakoglu, Arif; Ceri, Stefano; Masseroli, Marco; Weitschek, Emanuel

OpenGDC is an open-source Java tool for the automatic extraction, extension, and conversion in BED, GTF, CSV, JSON, and XML format of all the genomic experiments and clinical information from the Genomic Data Commons (GDC) portal https://gdc.cancer.gov/.

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Publication date:
August 25, 2020
DOI:
10.5281/zenodo.4000250

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10.5281/zenodo.4000250

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Keyword(s):
extraction conversion extension BED cancer TCGA GDC
Grants:
European Commission:
  • GeCo - Data-Driven Genomic Computing (693174)
License (for files):
MIT License

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Version 1.0.0 10.5281/zenodo.4000250 Aug 25, 2020
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