Software Open Access

OpenGDC

Cumbo, Fabio; Cappelli, Eleonora; Bernasconi, Anna; Canakoglu, Arif; Ceri, Stefano; Masseroli, Marco; Weitschek, Emanuel

OpenGDC is an open-source Java tool for the automatic extraction, extension, and conversion in BED, GTF, CSV, JSON, and XML format of all the genomic experiments and clinical information from the Genomic Data Commons (GDC) portal https://gdc.cancer.gov/.

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