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justincbagley/MissingDataFX: MissingDataFX v0.1.1

Justin C. Bagley

MissingDataFX v0.1.1

Testing effects of missing data on phylogenetic inferences

This is MissingDataFX v0.1.1, a new initial release version that is still in active development.

What's new?

This version of MissingDataFX introduces several changes, including:

  • A fix for a bug resulting in "No such file or directory" errors on sed and rm calls for '*_taxonLabels.txt' files under STEP #3, which caused final data files and some R plots not to be generated. I fixed this by introducing scripts that check the initial MissingDataFX.sh run output (MDFXTester.sh), fix the problem by creating a "*_taxonLabels.txt" file (fetchTaxonLabels.sh), and then re-run MissingDataFX.sh on sub-folder contents, completely from scratch.
  • Minor improvements to the code (e.g. using find instead of ls; double-quoting $/variable names to avoid globbing or splitting).

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