Table S1 residual heterozygosity fraction per strain 
"1","10","11","12","13","14","15","16","17","18","19","2","3","4","5","6","7","8","9","MT","X","Y","all_chr"
"CC001",0.021,0.006,0.035,0.033,0.006,0.014,0.007,0.008,0.001,0.025,0.003,0.004,0.006,0.005,0.012,0.011,0.111,0.004,0.005,0,0.005,0.024,"0.019"
"CC002",0.026,0.039,0.012,0.007,0.006,0.06,0.003,0.029,0.017,0.089,0.006,0.025,0.006,0.011,0.007,0.029,0.062,0.162,0.111,0,0.008,0.027,"0.034"
"CC003",0.059,0.007,0.038,0.015,0.015,0.026,0.03,0.004,0.135,0.009,0.008,0,0.031,0.016,0.064,0.007,0.08,0.004,0,0,0.087,0,"0.032"
"CC004",0.009,0.006,0.007,0.015,0.007,0.023,0.007,0.004,0.015,0.004,0.006,0.027,0.065,0.009,0.018,0.013,0.063,0.062,0.004,0,0.009,0,"0.020"
"CC005",0.01,0.005,0.007,0.018,0.007,0.007,0.014,0.003,0.019,0.005,0.03,0.003,0.006,0.007,0.016,0.01,0.008,0.001,0.007,0,0.006,0.002,"0.009"
"CC006",0.069,0.009,0.019,0.02,0.006,0.01,0.013,0.005,0.113,0.005,0.004,0.004,0.07,0.003,0.079,0.003,0.119,0.006,0.101,0,0.006,0.002,"0.037"
"CC007",0.056,0.002,0.023,0.004,0.063,0.014,0.004,0.04,0.067,0.005,0.012,0.002,0.021,0.031,0.012,0.075,0.01,0.006,0.003,0,0.005,0,"0.023"
"CC008",0.014,0.01,0.027,0.019,0.009,0.067,0.003,0.009,0.156,0.007,0.03,0.001,0.001,0.015,0.003,0.008,0.009,0.035,0.004,0,0.007,0.027,"0.019"
"CC009",0.006,0.007,0.007,0.042,0.029,0.01,0.005,0.107,0.145,0.004,0.034,0.003,0.007,0.05,0.005,0.066,0.011,0.039,0.003,0,0.006,0.002,"0.027"
"CC010",0.01,0.006,0.006,0.017,0.007,0.007,0.001,0.077,0.008,0.004,0.113,0.034,0.009,0.109,0.007,0.007,0.01,0.036,0.012,0,0.005,0.002,"0.024"
"CC011",0.014,0.005,0.008,0.104,0.002,0.026,0.004,0.014,0.146,0.013,0,0.004,0.02,0.014,0.004,0.006,0.006,0.064,0.001,0,0.008,0.002,"0.020"
"CC012",0.016,0.005,0.065,0.01,0.084,0.01,0.082,0.006,0.029,0.003,0.003,0.041,0.205,0.016,0.007,0.127,0.008,0.002,0.004,0,0.006,0.026,"0.039"
"CC013",0.009,0.003,0.004,0.022,0.004,0.009,0.004,0.002,0.022,0.004,0.004,0.005,0.006,0.008,0.004,0.012,0.009,0.004,0,0,0.008,0.002,"0.007"
"CC014",0.01,0.012,0.245,0.003,0.031,0.034,0.008,0.09,0.032,0.089,0.006,0.005,0.002,0.035,0.069,0.016,0.064,0.006,0.046,0,0.002,0.027,"0.047"
"CC015",0.245,0.01,0.01,0.016,0.003,0.012,0.007,0.005,0.029,0.145,0.005,0.003,0.005,0.144,0.005,0.01,0.154,0.212,0.001,0,0.006,0.002,"0.057"
"CC016",0.027,0.001,0.005,0.014,0.008,0.013,0.004,0.011,0.032,0.005,0.003,0.004,0,0.015,0.004,0.01,0.009,0.016,0.002,0,0.008,0.026,"0.010"
"CC017",0.01,0.008,0.142,0.029,0.004,0.059,0.007,0.006,0.029,0.013,0.056,0.005,0.062,0.047,0.004,0.013,0.01,0.006,0.003,0,0.065,0.002,"0.030"
"CC018",0.022,0.016,0.014,0.094,0.011,0.008,0.003,0.007,0.016,0.006,0.003,0.005,0.011,0.084,0.003,0.154,0.108,0.087,0.002,0,0.011,0,"0.038"
"CC019",0.033,0.002,0.059,0.063,0.006,0.013,0.003,0.01,0.043,0.005,0.003,0.073,0.105,0.054,0.003,0.009,0.02,0.004,0.024,0,0.006,0.002,"0.031"
"CC020",0.013,0.097,0.001,0.067,0.031,0.007,0.002,0.003,0.003,0.111,0.004,0.006,0.018,0.002,0.049,0.014,0.012,0.007,0.004,0,0.006,0.002,"0.019"
"CC021",0.039,0.044,0.013,0.012,0.01,0.013,0.005,0.006,0.249,0.007,0.011,0.043,0.043,0.018,0.005,0.023,0.007,0.002,0.145,0,0.013,0.002,"0.036"
"CC022",0.049,0.009,0.009,0.016,0.002,0.012,0.006,0.005,0.019,0.008,0.045,0.051,0.056,0.124,0.006,0.042,0.007,0.006,0.133,0,0.001,0.024,"0.035"
"CC023",0.009,0.02,0.267,0.008,0.026,0.101,0.014,0.007,0.022,0.006,0.004,0.004,0.01,0.017,0.003,0.073,0.011,0.029,0.003,0,0.127,0.026,"0.041"
"CC024",0.01,0.012,0.007,0.014,0.111,0.009,0.003,0.005,0.053,0.003,0.002,0.006,0.005,0.064,0.004,0.009,0.008,0.006,0.004,0,0.074,0,"0.019"
"CC025",0.011,0.025,0.009,0.019,0.006,0.009,0.004,0.022,0.019,0.031,0.005,0.006,0.004,0.016,0.005,0.016,0.079,0.042,0.017,0,0.014,0,"0.019"
"CC026",0.019,0.041,0.004,0.02,0.006,0.014,0.003,0.004,0.026,0.004,0.001,0.006,0.011,0.015,0.005,0.02,0.004,0.006,0.043,0,0.01,0.002,"0.013"
"CC027",0.008,0.003,0.007,0.02,0.057,0.011,0.003,0.004,0.226,0.005,0.003,0.01,0.002,0.023,0.003,0.015,0.039,0.004,0.093,0,0.009,0.002,"0.026"
"CC028",0.009,0.091,0.002,0.018,0.008,0.014,0.006,0.007,0.024,0.004,0.004,0.039,0.002,0.015,0.006,0.005,0.007,0.006,0.004,0,0.006,0.027,"0.014"
"CC029",0.04,0.024,0.044,0.017,0.049,0.04,0.115,0.001,0.027,0.003,0.003,0.014,0.009,0.207,0.005,0.014,0.006,0.004,0.036,0,0.007,0.002,"0.038"
"CC030",0.014,0.02,0.122,0.002,0.004,0.014,0.117,0.004,0.102,0.007,0.005,0.019,0.022,0.009,0.007,0.059,0.01,0.043,0.014,0,0.005,0.002,"0.032"
"CC031",0.029,0.058,0.012,0.007,0.008,0.035,0.013,0.003,0,0.023,0.163,0.029,0.006,0.006,0.048,0.041,0.004,0,0.052,0,0.01,0.002,"0.025"
"CC032",0.237,0.011,0.007,0.016,0.005,0.011,0.007,0.075,0.001,0,0.004,0.004,0.077,0.036,0.071,0.006,0.008,0.007,0.004,0,0.006,0.024,"0.034"
"CC033",0.008,0.006,0.008,0.019,0.008,0.025,0.033,0.228,0.023,0.005,0.007,0.002,0.022,0.026,0.005,0.133,0.013,0.122,0.001,0,0.002,0,"0.030"
"CC034",0.01,0.003,0.107,0.018,0.014,0.015,0.004,0.006,0.068,0.005,0.007,0.005,0.058,0.012,0.072,0.044,0.006,0.128,0.059,0,0.002,0,"0.035"
"CC035",0.011,0.014,0.079,0.014,0.012,0.156,0.074,0.056,0.104,0.008,0.093,0.069,0.003,0.117,0.004,0.008,0.011,0.031,0.004,0,0.006,0.026,"0.043"
"CC036",0.092,0.003,0.026,0.045,0.088,0.012,0.099,0.002,0.017,0.004,0.001,0.135,0.116,0.012,0.008,0.015,0.033,0,0.003,0,0.005,0,"0.040"
"CC037",0.009,0.003,0.004,0.006,0.005,0.008,0.004,0.002,0.003,0,0.003,0.003,0.004,0.007,0.005,0.003,0.005,0.006,0.003,0,0.01,0,"0.005"
"CC038",0.01,0.005,0.02,0.015,0.009,0.017,0.005,0.018,0.01,0.004,0,0.153,0.007,0.016,0.006,0.04,0.05,0.007,0.002,0,0.006,0.027,"0.027"
"CC039",0.189,0.008,0.021,0.102,0.028,0.018,0.008,0.004,0.034,0.006,0.003,0.006,0.035,0.033,0.161,0.011,0.01,0.043,0.004,0,0.023,0,"0.041"
"CC040",0.035,0.044,0.069,0.006,0.125,0.013,0.005,0.005,0.003,0.007,0.005,0.005,0.153,0.013,0.056,0.005,0.022,0.046,0.052,0,0,0,"0.035"
"CC041",0.031,0.005,0.009,0.014,0.058,0.076,0.004,0.014,0.036,0.032,0.004,0.011,0.036,0.025,0.012,0.008,0.04,0.005,0.006,0,0.008,0.002,"0.021"
"CC042",0.136,0.004,0.004,0.011,0.006,0.001,0.015,0.01,0.013,0.075,0.018,0.005,0.004,0.021,0.004,0.011,0.01,0.024,0.001,0,0.097,0.002,"0.022"
"CC043",0.011,0.083,0.007,0.019,0.008,0.014,0.054,0.005,0.015,0.004,0.006,0.003,0.007,0.015,0.005,0.011,0.017,0.007,0.025,0,0.004,0,"0.015"
"CC044",0.014,0.173,0.009,0.004,0.016,0.009,0.006,0.003,0.126,0.08,0.004,0.006,0.105,0.015,0.117,0.108,0.089,0.011,0.052,0,0.012,0.024,"0.050"
"CC045",0.043,0.077,0.091,0.111,0.008,0.126,0.004,0.224,0.019,0.005,0.006,0.005,0.031,0.033,0.176,0.015,0.01,0.001,0.186,0,0.008,0.024,"0.058"
"CC046",0.058,0.006,0.009,0.062,0.006,0.078,0.005,0.003,0.011,0.128,0.003,0.006,0.004,0.09,0.027,0.013,0.021,0.021,0.21,0,0.008,0.002,"0.038"
"CC047",0.02,0.044,0.02,0.049,0.018,0.014,0.003,0.011,0.061,0.01,0.001,0.032,0.002,0.034,0.005,0.006,0.014,0.006,0.003,0,0.006,0.002,"0.019"
"CC048",0.136,0.005,0.007,0.044,0.069,0.25,0.004,0.006,0.019,0.004,0.005,0.005,0.006,0.018,0.086,0.01,0.007,0.088,0.081,0,0.023,0.021,"0.041"
"CC049",0.037,0.034,0.077,0.07,0.006,0.017,0.004,0.002,0.069,0.014,0.008,0.027,0.023,0.141,0.046,0.014,0.006,0.074,0.141,0,0.001,0.027,"0.047"
"CC050",0.012,0.007,0.04,0.018,0.006,0.012,0.002,0.004,0.024,0.02,0.004,0.018,0.006,0.009,0.004,0.072,0.009,0.007,0.048,0,0.004,0.002,"0.018"
"CC051",0.011,0.005,0.003,0.021,0.055,0.031,0.006,0,0.019,0.062,0.016,0.01,0.043,0.008,0.004,0,0.007,0.002,0.012,0,0.025,0.002,"0.014"
"CC052",0.063,0.048,0.014,0.036,0.013,0.015,0.082,0.007,0.015,0.004,0.004,0.009,0.058,0.036,0.004,0.086,0.122,0.003,0.004,0,0.011,0.002,"0.035"
"CC053",0.031,0.002,0,0.236,0.077,0.01,0.007,0.03,0.032,0.13,0.005,0.008,0.025,0.134,0.005,0.015,0.139,0.081,0.002,0,0.004,0,"0.046"
"CC054",0.029,0.004,0.023,0.372,0.006,0.007,0.003,0.02,0.04,0.063,0.045,0.005,0.008,0.037,0.092,0.068,0.01,0.047,0.03,0,0.004,0.002,"0.040"
"CC055",0.037,0.004,0.006,0.077,0.006,0.011,0.008,0.007,0.032,0.003,0.032,0.004,0.04,0.05,0.005,0.133,0.076,0.173,0.044,0,0.085,0.002,"0.042"
"CC056",0.005,0.005,0.024,0.016,0.02,0.01,0.002,0.024,0.016,0.004,0.004,0.009,0.005,0.006,0.005,0.005,0.006,0.001,0.029,0,0.006,0.002,"0.010"
"CC057",0.071,0.012,0.008,0.019,0.004,0.028,0.005,0.24,0.028,0.005,0.005,0.005,0.01,0.014,0.004,0.01,0.055,0.388,0.116,0,0.011,0.002,"0.049"
"CC058",0.133,0.004,0.084,0.009,0.011,0.062,0.005,0.091,0.208,0.005,0.031,0.13,0.018,0.043,0.071,0.127,0.025,0.018,0.043,0,0.066,0.027,"0.065"
"CC059",0.01,0.005,0.003,0.011,0.006,0.121,0.029,0,0.086,0.114,0.027,0.002,0.023,0.011,0.004,0.002,0.055,0.001,0.019,0,0.011,0.002,"0.021"
"CC060",0.079,0.064,0.026,0.101,0.067,0.038,0.003,0.072,0.047,0.021,0.005,0.016,0.051,0.021,0.021,0.032,0.074,0.004,0.005,0,0.118,0.002,"0.041"
"CC061",0.005,0.001,0.052,0.02,0.007,0.108,0.002,0.001,0.015,0.055,0.014,0.023,0.01,0.015,0.058,0.003,0.005,0.005,0.018,0,0.006,0.027,"0.021"
"CC062",0.054,0.006,0.05,0.013,0.007,0.02,0.004,0.016,0.027,0.004,0.005,0.204,0.031,0.059,0.019,0.031,0.031,0.006,0.006,0,0.006,0.002,"0.041"
"CC063",0.058,0.002,0.011,0.012,0.02,0.214,0.007,0.005,0.028,0.004,0.004,0.01,0.059,0.01,0.005,0.135,0.006,0.002,0.006,0,0.005,0.026,"0.027"
"CC065",0.037,0.201,0.014,0.016,0.013,0,0.023,0.004,0.029,0.002,0.023,0.032,0.089,0.083,0.011,0,0.007,0.005,0.021,0,0.005,0.027,"0.032"
"CC068",0.012,0.034,0.01,0.202,0.18,0.012,0.006,0.255,0.059,0.002,0.003,0.007,0.082,0.013,0.003,0.145,0.02,0.002,0.061,0,0.007,0.002,"0.047"
"CC070",0.032,0.097,0.046,0.048,0.014,0.007,0.005,0.006,0.122,0.15,0.04,0.015,0.004,0.058,0.116,0.075,0.024,0.005,0.007,0,0.144,0.002,"0.048"
"CC071",0.031,0.005,0.091,0.022,0.022,0.128,0.008,0.009,0.078,0.005,0.015,0.048,0.057,0.016,0.03,0.166,0.009,0.005,0.097,0,0.013,0.002,"0.046"
"CC072",0.011,0.005,0.007,0.008,0.007,0.016,0.005,0.005,0.001,0.003,0.002,0.005,0,0.008,0.004,0.008,0.005,0.017,0.003,0,0.002,0.002,"0.006"
"CC073",0.045,0.095,0.011,0.016,0.244,0.009,0.008,0.004,0.146,0.001,0.011,0.004,0.004,0.03,0.005,0.015,0.008,0.019,0.15,0,0.002,0.024,"0.039"
"CC074",0.121,0.013,0.107,0.112,0.011,0.013,0.008,0.023,0.017,0.002,0.007,0.006,0.085,0.04,0.061,0.013,0.028,0.006,0.004,0,0.004,0,"0.038"
"CC075",0.122,0.018,0.005,0.018,0.008,0.001,0.029,0.004,0.022,0.009,0.207,0.005,0.039,0.014,0.033,0.155,0.071,0.006,0.116,0,0.011,0.026,"0.045"
"CC076",0.024,0.051,0.007,0.002,0.022,0.035,0.093,0.043,0.032,0.03,0.014,0.007,0.182,0.067,0.119,0.039,0.023,0.005,0.004,0,0.018,0.026,"0.040"