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UCSCXenaTools-v1.3.3.zip

ropensci-UCSCXenaTools-2bc480b
- .Rbuildignore 268 Bytes
- .github
  - workflows
    - greetings.yml 343 Bytes
    - main.yml 2.4 kB
- .gitignore 70 Bytes
- .travis.yml 172 Bytes
- CRAN-RELEASE 129 Bytes
- DESCRIPTION 1.6 kB
- LICENSE.md 34.9 kB
- NAMESPACE 1.2 kB
- NEWS.md 585 Bytes
- R
  - XenaBrowse.R 2.4 kB
  - XenaDownload.R 4.0 kB
  - XenaFilter.R 2.7 kB
  - XenaGenerate.R 999 Bytes
  - XenaHub-class.R 9.8 kB
  - XenaPrepare.R 8.4 kB
  - XenaQuery.R 1.4 kB
  - XenaQueryProbeMap.R 1.2 kB
  - XenaScan.R 935 Bytes
  - api_higher.R 2.3 kB
  - api_inner.R 6.9 kB
  - api_xq.R 2.4 kB
  - data.R 403 Bytes
  - fetch.R 8.9 kB
  - shiny.R 2.8 kB
  - simplify.R 32.8 kB
  - utils-pipe.R 347 Bytes
  - zzz.R 907 Bytes
- README.Rmd 9.3 kB
- README.md 11.9 kB
- UCSCXenaTools.Rproj 386 Bytes
- _pkgdown.yml 1.2 kB
- appveyor.yml 860 Bytes
- codecov.yml 176 Bytes
- codemeta.json 8.4 kB
- data
  - XenaData.rda 37.7 kB
- docs
  - 404.html 6.0 kB
  - LICENSE.html 47.2 kB
  - apple-touch-icon-120x120.png 8.6 kB
  - apple-touch-icon-152x152.png 11.1 kB
  - apple-touch-icon-180x180.png 13.8 kB
  - apple-touch-icon-60x60.png 3.9 kB
  - apple-touch-icon-76x76.png 4.8 kB
  - apple-touch-icon.png 13.8 kB
  - articles
    - USCSXenaTools.html 38.4 kB
    - index.html 6.0 kB
  - authors.html 7.7 kB
  - bootstrap-toc.css 1.8 kB
  - bootstrap-toc.js 4.8 kB
  - docsearch.css 11.8 kB
  - docsearch.js 2.0 kB
  - favicon-16x16.png 1.1 kB
  - favicon-32x32.png 1.9 kB
  - favicon.ico 15.1 kB
  - index.html 30.9 kB
  - link.svg 810 Bytes
  - logo.png 48.2 kB
  - news
    - index.html 6.5 kB
  - pkgdown.css 6.9 kB
  - pkgdown.js 3.2 kB
  - pkgdown.yml 121 Bytes
  - reference
    - XenaBrowse.html 8.4 kB
    - XenaData.html 9.1 kB
    - XenaDataUpdate.html 8.0 kB
    - XenaDownload.html 9.4 kB
    - XenaFilter.html 12.3 kB
    - XenaGenerate.html 10.7 kB
    - XenaHub-class.html 6.6 kB
    - XenaHub.html 10.4 kB
    - XenaPrepare.html 11.2 kB
    - XenaQuery.html 7.9 kB
    - XenaQueryProbeMap.html 8.0 kB
    - XenaScan.html 10.5 kB
    - XenaShiny.html 6.3 kB
    - availTCGA.html 11.6 kB
    - cohorts.html 10.2 kB
    - datasets.html 98.3 kB
    - downloadTCGA.html 10.7 kB
    - fetch.html 1.6 MB
    - figures
      - logo.png 48.2 kB
    - getTCGAdata.html 22.9 kB
    - hosts.html 7.5 kB
    - index.html 13.6 kB
    - pipe.html 6.4 kB
    - samples.html 9.5 kB
    - showTCGA.html 9.8 kB
    - to_snake.html 7.2 kB
    - xena_default_hosts.html 6.9 kB
- inst
  - CITATION 783 Bytes
  - api.RData 1.6 kB
  - dataset_metadata.RData 302.6 kB
  - develop.R 1.3 kB
  - queries
    - allCohorts.xq 199 Bytes
    - allDatasets.xq 86 Bytes
    - allDatasetsN.xq 132 Bytes
    - allFieldMetadata.xq 256 Bytes
    - cohortSamples.xq 345 Bytes
    - cohortSummary.xq 159 Bytes
    - datasetFetch.xq 129 Bytes
    - datasetField.xq 234 Bytes
    - datasetFieldExamples.xq 292 Bytes
    - datasetFieldN.xq 264 Bytes
    - datasetGeneProbeAvg.xq 679 Bytes
    - datasetGeneProbesValues.xq 408 Bytes
    - datasetList.xq 759 Bytes
    - datasetMetadata.xq 760 Bytes
    - datasetProbeSignature.xq 230 Bytes
    - datasetProbeValues.xq 595 Bytes
    - datasetSamples.xq 356 Bytes
    - datasetSamplesNDenseMatrix.xq 175 Bytes
    - datasetsNullRows.xq 120 Bytes
    - featureList.xq 260 Bytes
    - fieldCodes.xq 473 Bytes
    - fieldMetadata.xq 388 Bytes
    - geneTranscripts.xq 194 Bytes
    - matchFields.xq 243 Bytes
    - probeCount.xq 124 Bytes
    - probemapList.xq 122 Bytes
    - refGeneExons.xq 217 Bytes
    - refGenePosition.xq 143 Bytes
    - refGeneRange.xq 205 Bytes
    - segmentDataExamples.xq 146 Bytes
    - segmentedDataRange.xq 654 Bytes
    - sparseData.xq 692 Bytes
    - sparseDataExamples.xq 210 Bytes
    - sparseDataMatchField.xq 520 Bytes
    - sparseDataMatchFieldSlow.xq 502 Bytes
    - sparseDataMatchPartialField.xq 581 Bytes
    - sparseDataRange.xq 715 Bytes
    - transcriptExpression.xq 1.7 kB
  - test_api.R 12.0 kB
- man
  - XenaBrowse.Rd 728 Bytes
  - XenaData.Rd 406 Bytes
  - XenaDataUpdate.Rd 674 Bytes
  - XenaDownload.Rd 1.3 kB
  - XenaFilter.Rd 1.3 kB
  - XenaGenerate.Rd 903 Bytes
  - XenaHub-class.Rd 417 Bytes
  - XenaHub.Rd 1.7 kB
  - XenaPrepare.Rd 2.4 kB
  - XenaQuery.Rd 558 Bytes
  - XenaQueryProbeMap.Rd 595 Bytes
  - XenaScan.Rd 1.4 kB
  - XenaShiny.Rd 197 Bytes
  - availTCGA.Rd 562 Bytes
  - cohorts.Rd 402 Bytes
  - datasets.Rd 409 Bytes
  - downloadTCGA.Rd 2.0 kB
  - fetch.Rd 4.0 kB
  - figures
    - logo.png 48.2 kB
  - getTCGAdata.Rd 4.7 kB
  - hosts.Rd 388 Bytes
  - pipe.Rd 256 Bytes
  - samples.Rd 1.2 kB
  - showTCGA.Rd 661 Bytes
  - to_snake.Rd 379 Bytes
  - xena_default_hosts.Rd 435 Bytes
- paper
  - overview.png 220.0 kB
  - paper.Rmd 497 Bytes
  - paper.bib 3.0 kB
  - paper.md 3.6 kB
- pkgdown
  - favicon
    - apple-touch-icon-120x120.png 8.6 kB
    - apple-touch-icon-152x152.png 11.1 kB
    - apple-touch-icon-180x180.png 13.8 kB
    - apple-touch-icon-60x60.png 3.9 kB
    - apple-touch-icon-76x76.png 4.8 kB
    - apple-touch-icon.png 13.8 kB
    - favicon-16x16.png 1.1 kB
    - favicon-32x32.png 1.9 kB
    - favicon.ico 15.1 kB
- tests
  - testthat
    - test-basic-workflow.R 2.7 kB
    - test-full-tests.R 4.4 kB
  - testthat.R 70 Bytes
- vignettes
  - .gitignore 11 Bytes
  - USCSXenaTools.Rmd 9.0 kB