canprot-1.0.1.zip
jedick-canprot-4043ffa
.Rbuildignore
114 Bytes
.gitignore
93 Bytes
DESCRIPTION
1.6 kB
LICENSE
35.1 kB
NAMESPACE
1.6 kB
R
CLES.R
1.1 kB
Ehplot.R
870 Bytes
PS.R
429 Bytes
check_IDs.R
2.3 kB
cleanup.R
1.4 kB
diffplot.R
6.9 kB
get_colors.R
1.2 kB
get_comptab.R
6.3 kB
groupplots.R
8.9 kB
internal.R
459 Bytes
metrics.R
7.5 kB
mkvig.R
874 Bytes
pdat_3D.R
10.1 kB
pdat_breast.R
10.8 kB
pdat_colorectal.R
16.5 kB
pdat_glucose.R
11.1 kB
pdat_hypoxia.R
16.9 kB
pdat_liver.R
11.7 kB
pdat_lung.R
9.5 kB
pdat_multi.R
3.2 kB
pdat_osmotic.R
2.4 kB
pdat_osmotic_bact.R
12.3 kB
pdat_osmotic_euk.R
7.7 kB
pdat_osmotic_halo.R
4.3 kB
pdat_pancreatic.R
12.6 kB
pdat_prostate.R
8.4 kB
pdat_secreted.R
10.0 kB
protcomp.R
2.2 kB
qdist.R
1.3 kB
rankdiff.R
1.1 kB
rankplot.R
2.7 kB
recomp.R
227 Bytes
xsummary.R
4.1 kB
xsummary2.R
4.2 kB
xsummary3.R
3.5 kB
zzz.R
1.6 kB
README.md
2.3 kB
demo
00Index
505 Bytes
X3D.R
29 Bytes
breast.R
33 Bytes
colorectal.R
37 Bytes
glucose.R
34 Bytes
hypoxia.R
34 Bytes
liver.R
32 Bytes
lung.R
31 Bytes
osmotic_bact.R
39 Bytes
osmotic_euk.R
38 Bytes
osmotic_halo.R
39 Bytes
pancreatic.R
37 Bytes
prostate.R
35 Bytes
secreted.R
35 Bytes
inst
CITATION
711 Bytes
NEWS
9.9 kB
doc
canprot.html
5.5 kB
extdata
aa
archaea
JSP+19_aa.csv.xz
27.6 kB
LRB+09_aa.csv.xz
5.8 kB
bacteria
ADW+14_aa.csv.xz
6.6 kB
AST+20_aa.csv.xz
17.8 kB
FTR+10_aa.csv.xz
3.3 kB
GBR+20_aa.csv.xz
6.1 kB
KAK+17_aa.csv.xz
5.2 kB
KKG+12_aa.csv.xz
13.2 kB
KKG+14_aa.csv.xz
41.1 kB
KLB+15_aa.csv.xz
9.3 kB
KSK+18_aa.csv.xz
13.2 kB
LJC+18_aa.csv.xz
3.8 kB
LLYL17_aa.csv.xz
6.5 kB
LPK+13_aa.csv.xz
5.5 kB
LWS+19_aa.csv.xz
3.3 kB
LYS+17_aa.csv.xz
9.0 kB
MGF+19_aa.csv.xz
8.3 kB
PBP+14_aa.csv.xz
6.0 kB
PNWB09_aa.csv.xz
3.6 kB
QHT+13_aa.csv.xz
8.4 kB
SKV+16_aa.csv.xz
36.7 kB
TSC18_aa.csv.xz
8.3 kB
ZLZ+16_aa.csv.xz
9.3 kB
cow
WFSL09_aa.csv.xz
3.0 kB
dog
SPJ+20_aa.csv.xz
4.3 kB
human
CWG+19_aa.csv.xz
15.2 kB
SCL+20_aa.csv.xz
18.8 kB
mouse
BEM+20_aa.csv.xz
6.9 kB
BHB+15_aa.csv.xz
32.6 kB
BSG15_aa.csv.xz
3.4 kB
CGH+17_aa.csv.xz
8.7 kB
DAA+05_aa.csv.xz
1.4 kB
DCH+14_aa.csv.xz
4.3 kB
JCP+16_aa.csv.xz
1.7 kB
KKC+16_aa.csv.xz
4.4 kB
LAR+12_aa.csv.xz
3.1 kB
LDB+15_aa.csv.xz
12.6 kB
LPK+19_aa.csv.xz
18.6 kB
MHN+08_aa.csv.xz
2.8 kB
MZH+14_aa.csv.xz
2.4 kB
PDT+19_aa.csv.xz
32.9 kB
SBB+06_aa.csv.xz
25.6 kB
SFKD17_aa.csv.xz
7.0 kB
WCM+09_aa.csv.xz
4.3 kB
rat
CCW+13_aa.csv.xz
5.4 kB
DPL+10_aa.csv.xz
5.9 kB
LRS+14_aa.csv.xz
3.8 kB
MFD+10_aa.csv.xz
2.5 kB
MHP+20_aa.csv.xz
1.5 kB
RLA+10_aa.csv.xz
7.8 kB
XCJ+16_aa.csv.xz
4.5 kB
yeast
GSC14_aa.csv.xz
6.2 kB
JBG+18_aa.csv.xz
4.3 kB
LTH+11_aa.csv.xz
42.1 kB
PW08_aa.csv.xz
3.3 kB
RBP+16_aa.csv.xz
7.6 kB
SCG+15_aa.csv.xz
29.3 kB
YDZ+15_aa.csv.xz
1.4 kB
expression
3D
DKM+20.csv.xz
1.3 kB
EWK+19.csv.xz
3.9 kB
GADS19.csv.xz
2.0 kB
HKX+14.csv.xz
3.3 kB
HLC19.csv.xz
4.5 kB
KDS+14.csv.xz
3.5 kB
KJK+18.csv.xz
9.7 kB
LPK+19.csv.xz
5.8 kB
MHG+12.csv.xz
11.7 kB
MTK+15.csv.xz
852 Bytes
MVC+12.csv.xz
3.7 kB
PLC+10.csv.xz
584 Bytes
RKP+14.csv.xz
3.5 kB
SAS+14.csv.xz
3.1 kB
TGD18.csv.xz
7.9 kB
WRK+14.csv.xz
10.4 kB
YLW+16.csv.xz
7.7 kB
YYW+13.csv.xz
1.2 kB
ZMH+13.csv.xz
18.5 kB
breast
AMG+08.csv.xz
5.3 kB
BST+17.csv.xz
12.7 kB
CIR+10.csv.xz
1.3 kB
CVJ+15.csv.xz
5.8 kB
GCS+19.csv.xz
11.8 kB
GSB+14.csv.xz
1.3 kB
GTM+12.csv.xz
4.1 kB
HTP+11.csv.xz
1.1 kB
LLC+19.csv.xz
3.5 kB
LLF+20.csv.xz
6.8 kB
LLL+13.csv.xz
2.6 kB
PBR+16.csv.xz
9.0 kB
PGT+16.csv.xz
1.5 kB
PPH+14.csv.xz
5.5 kB
SRG+10.csv.xz
1.4 kB
SRS+13.csv.xz
20.0 kB
TZD+18.csv.xz
23.0 kB
colorectal
AKG+18.csv.xz
3.7 kB
AKP+10.csv.xz
5.8 kB
BPV+11.csv.xz
8.0 kB
CTW+17.csv.xz
9.4 kB
CZD+14.csv.xz
3.6 kB
FGW+12.csv.xz
824 Bytes
HZW+17.csv.xz
7.2 kB
JCF+11.csv.xz
1.2 kB
JKMF10.csv.xz
968 Bytes
KKL+12.csv.xz
4.6 kB
KWA+14.csv.xz
1.5 kB
KYK+12.csv.xz
4.3 kB
LLL+17.csv.xz
2.6 kB
LPL+16.csv.xz
2.8 kB
LXM+16.csv.xz
3.3 kB
MCZ+13.csv.xz
1.9 kB
MRK+11.csv.xz
14.9 kB
NKG+17.csv.xz
3.1 kB
PHL+16.csv.xz
4.2 kB
QMB+17.csv.xz
3.0 kB
SHHS11.csv.xz
824 Bytes
STA+19.csv.xz
9.6 kB
STK+15.csv.xz
2.7 kB
TMS+17.csv.xz
6.2 kB
UNS+14.csv.xz
1.4 kB
VHW+19.csv.xz
4.2 kB
WDO+15.csv.xz
27.0 kB
WKP+14.csv.xz
4.9 kB
WOD+12.csv.xz
9.4 kB
WTK+08.csv.xz
2.4 kB
WYL+19.csv.xz
1.2 kB
XZC+10.csv.xz
15.4 kB
YLZ+12.csv.xz
4.0 kB
ZLY+17.csv.xz
5.5 kB
ZYS+10.csv.xz
3.6 kB
glucose
BTX+17.csv.xz
3.6 kB
CCC+12.csv.xz
1.9 kB
CCCC13.csv.xz
4.0 kB
CCW+13.csv.xz
3.7 kB
GSC14.csv.xz
4.1 kB
IXA+19.csv.xz
3.3 kB
LDB+15.csv.xz
11.6 kB
MFD+10.csv.xz
680 Bytes
MHP+20.csv.xz
1.4 kB
MPR+20.csv.xz
4.9 kB
PW08.csv.xz
5.6 kB
SFG+12.csv.xz
3.3 kB
SFKD17.csv.xz
6.2 kB
WCM+09.csv.xz
7.2 kB
WFSL09.csv.xz
1.4 kB
halophiles
JSP+19.csv.xz
30.5 kB
LLYL17.csv.xz
5.0 kB
LRB+09.csv.xz
4.3 kB
ZLZ+16.csv.xz
9.3 kB
hypoxia
BCMS20.csv.xz
3.5 kB
BMJ+11.csv.xz
1.7 kB
BSA+15.csv.xz
1.4 kB
CBW+11.csv.xz
3.5 kB
CSK+19.csv.xz
1.2 kB
DCH+14.csv.xz
3.8 kB
DPL+10.csv.xz
11.6 kB
DYL+14.csv.xz
28.2 kB
FWH+13.csv.xz
2.1 kB
GBH+18.csv.xz
9.3 kB
GPT+19.csv.xz
6.0 kB
HWA+16.csv.xz
11.3 kB
HXS+06.csv.xz
576 Bytes
LAR+12.csv.xz
2.2 kB
LCS16.csv.xz
12.4 kB
LKK+18.csv.xz
1.1 kB
LLL+19.csv.xz
2.1 kB
RHD+13.csv.xz
14.2 kB
RVN+20.csv.xz
9.6 kB
SBB+06.csv.xz
4.1 kB
SPJ+20.csv.xz
1.7 kB
VTMF13.csv.xz
7.2 kB
WTG+18.csv.xz
7.1 kB
XCJ+16.csv.xz
4.8 kB
ZXS+17.csv.xz
8.2 kB
liver
BEM+20.csv.xz
3.8 kB
BLP+05.csv.xz
856 Bytes
BOK+18.csv.xz
1.8 kB
BSG15.csv.xz
2.1 kB
CHN+08.csv.xz
2.3 kB
DTS+07.csv.xz
480 Bytes
GJZ+17.csv.xz
704 Bytes
GWS+17.csv.xz
3.1 kB
GZD+19.csv.xz
5.7 kB
GZL+20.csv.xz
8.7 kB
JSZ+19.csv.xz
17.2 kB
KOK+13.csv.xz
960 Bytes
LHT+04.csv.xz
1.5 kB
LMG+11.csv.xz
23.9 kB
LRL+12.csv.xz
3.4 kB
LTZ+05.csv.xz
820 Bytes
MBK+13.csv.xz
6.5 kB
NBM+16.csv.xz
4.7 kB
NMB+16.csv.xz
3.1 kB
QPP+17.csv.xz
2.6 kB
QXC+16.csv.xz
7.0 kB
RLA+10.csv.xz
3.9 kB
RPM+15.csv.xz
3.5 kB
SCL+20.csv.xz
6.0 kB
SXS+07.csv.xz
388 Bytes
WLL+17.csv.xz
7.1 kB
XWS+14.csv.xz
25.4 kB
YXZ+18.csv.xz
2.4 kB
ZZL+19.csv.xz
1.7 kB
lung
BLL+16.csv.xz
18.9 kB
FGP+16.csv.xz
8.4 kB
FGW+17.csv.xz
9.7 kB
HHH+16.csv.xz
12.9 kB
JCP+16.csv.xz
1.7 kB
KHA+12.csv.xz
2.6 kB
KNT+15.csv.xz
3.8 kB
LLY+14.csv.xz
2.6 kB
LWT+14.csv.xz
15.8 kB
LXC+06.csv.xz
2.7 kB
LZW+17.csv.xz
488 Bytes
SFS+17.csv.xz
7.9 kB
TLB+16.csv.xz
16.0 kB
WLC+17.csv.xz
1.7 kB
YCC+17.csv.xz
14.1 kB
YLL+12.csv.xz
1.6 kB
ZLH+14.csv.xz
13.2 kB
ZLS+14.csv.xz
1.1 kB
ZZD+12.csv.xz
5.1 kB
ZZY+13.csv.xz
1.4 kB
multi
CGH+17.csv.xz
4.2 kB
CLY+18.csv.xz
9.2 kB
KAN+19.csv.xz
8.4 kB
osmotic
ADW+14.csv.xz
3.3 kB
AST+20.csv.xz
7.7 kB
CLG+15.csv.xz
2.4 kB
DAA+05.csv.xz
1.0 kB
FTR+10.csv.xz
3.1 kB
GAM+16.csv.xz
5.1 kB
GBR+20.csv.xz
2.4 kB
JBG+18.csv.xz
2.3 kB
KAK+17.csv.xz
2.2 kB
KKG+12.csv.xz
7.4 kB
KKG+14.csv.xz
20.4 kB
KLB+15.csv.xz
4.4 kB
KSK+18.csv.xz
2.3 kB
LFY+12.csv.xz
3.3 kB
LJC+18.csv.xz
3.9 kB
LPK+13.csv.xz
1.7 kB
LTH+11.csv.xz
30.6 kB
LWS+19.csv.xz
1.6 kB
LYS+17.csv.xz
2.0 kB
MGF+19.csv.xz
4.0 kB
MHN+08.csv.xz
1.7 kB
OBBH11.csv.xz
7.6 kB
PBP+14.csv.xz
3.0 kB
PNWB09.csv.xz
976 Bytes
QHT+13.csv.xz
2.9 kB
RBP+16.csv.xz
5.1 kB
SCG+15.csv.xz
5.6 kB
SKV+16.csv.xz
9.0 kB
TSC18.csv.xz
1.9 kB
TSZ+13.csv.xz
3.5 kB
YDZ+15.csv.xz
1.2 kB
pancreatic
BHB+15.csv.xz
11.2 kB
BZQ+14.csv.xz
3.5 kB
CBP+07.csv.xz
3.8 kB
CGB+05.csv.xz
2.4 kB
CHO+18.csv.xz
1.5 kB
CTZ+09.csv.xz
1.4 kB
CYD+05.csv.xz
4.0 kB
ISI+14.csv.xz
2.7 kB
KBK+12.csv.xz
688 Bytes
KHO+13.csv.xz
6.6 kB
KKC+16.csv.xz
5.1 kB
KPC+13.csv.xz
7.8 kB
LHE+04.csv.xz
2.7 kB
MLC+11.csv.xz
5.0 kB
MZH+14.csv.xz
2.7 kB
PCS+11.csv.xz
10.3 kB
PKB+13.csv.xz
2.5 kB
SWW+18.csv.xz
6.9 kB
TMW+11.csv.xz
1.6 kB
WLL+13.csv.xz
8.8 kB
WLL+13a.csv.xz
9.8 kB
YKK+13.csv.xz
8.1 kB
ZAH+19.csv.xz
1.4 kB
ZNWL13.csv.xz
2.9 kB
prostate
CZL+16.csv.xz
2.0 kB
GLZ+18.csv.xz
7.7 kB
GTR+08.csv.xz
2.2 kB
HZH+12.csv.xz
11.7 kB
IWT+16.csv.xz
5.6 kB
JHZ+13.csv.xz
1.9 kB
KHN+20.csv.xz
3.3 kB
KPB+10.csv.xz
3.7 kB
KRN+19.csv.xz
1.6 kB
LAJ+18.csv.xz
39.6 kB
LCS+14.csv.xz
6.3 kB
MAN+18.csv.xz
2.0 kB
MMF+20.csv.xz
6.4 kB
SHC+20.csv.xz
3.8 kB
TOT+19.csv.xz
3.5 kB
ZYW+19.csv.xz
6.3 kB
ZZX+20.csv.xz
21.8 kB
secreted
BRA+10.csv.xz
2.1 kB
CRS+15.csv.xz
2.5 kB
CWG+19.csv.xz
8.5 kB
DWW+18.csv.xz
940 Bytes
FPR+18.csv.xz
612 Bytes
JVC+12.csv.xz
6.1 kB
LRS+14.csv.xz
4.6 kB
NJVS19.csv.xz
6.6 kB
ODS+18.csv.xz
1.2 kB
PDT+19.csv.xz
23.9 kB
PTD+10.csv.xz
10.4 kB
RSE+16.csv.xz
1.0 kB
RTA+15.csv.xz
1.5 kB
SKA+13.csv.xz
1.4 kB
SRS+13a.csv.xz
8.5 kB
YKK+14.csv.xz
1.9 kB
misc
bluered1000.txt
10.0 kB
bluered2000.txt
20.0 kB
phylostrata
LMM16.csv.xz
49.1 kB
TPPG17.csv.xz
140.3 kB
protein
human_additional.rds
57.2 kB
human_base.rds
438.1 kB
human_extra.csv
211.5 kB
uniprot_updates.csv
21.8 kB
summary
mksummary.R
702 Bytes
summary_colorectal.csv
4.4 kB
summary_hypoxia.csv
4.1 kB
summary_osmotic.csv
4.2 kB
summary_pancreatic.csv
2.7 kB
oldvignettes
basis_comparison.Rmd
3.3 kB
colorectal.Rmd
13.6 kB
cpdat.bib
22 Bytes
hyperosmotic.Rmd
4.2 kB
hypoxia.Rmd
5.7 kB
mkall.R
325 Bytes
pancreatic.Rmd
4.8 kB
peerj.csl
22 Bytes
potential_diagrams.Rmd
2.3 kB
vignettes
3D.Rmd
6.1 kB
3D.csv
4.3 kB
breast.Rmd
6.1 kB
breast.csv
3.5 kB
colorectal.Rmd
6.3 kB
colorectal.csv
4.6 kB
cpdat.bib
137.8 kB
glucose.Rmd
5.5 kB
glucose.csv
4.3 kB
hypoxia.Rmd
6.8 kB
hypoxia.csv
5.3 kB
liver.Rmd
7.2 kB
liver.csv
5.2 kB
lung.Rmd
6.0 kB
lung.csv
4.2 kB
mkall.R
409 Bytes
osmotic_bact.Rmd
5.5 kB
osmotic_bact.csv
5.5 kB
osmotic_euk.Rmd
4.7 kB
osmotic_euk.csv
4.2 kB
osmotic_halo.Rmd
4.0 kB
osmotic_halo.csv
1.5 kB
pancreatic.Rmd
5.5 kB
pancreatic.csv
3.1 kB
peerj.csl
5.8 kB
prostate.Rmd
5.9 kB
prostate.csv
3.8 kB
secreted.Rmd
6.4 kB
secreted.csv
4.0 kB
man
CLES.Rd
5.9 kB
Ehplot.Rd
1.1 kB
PS.Rd
2.9 kB
canprot-package.Rd
3.1 kB
check_IDs.Rd
2.1 kB
cleanup.Rd
2.2 kB
diffplot.Rd
4.5 kB
get_colors.Rd
1.0 kB
get_comptab.Rd
3.8 kB
groupplots.Rd
2.6 kB
human.Rd
3.4 kB
macros
macros.Rd
1.5 kB
metrics.Rd
7.0 kB
mkvig.Rd
1.4 kB
pdat_.Rd
4.3 kB
protcomp.Rd
2.3 kB
qdist.Rd
1.6 kB
rankdiff.Rd
1.9 kB
rankplot.Rd
2.2 kB
recomp.Rd
1.2 kB
xsummary.Rd
2.0 kB
vignettes
canprot.Rmd
1.2 kB
mkall.R
471 Bytes