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D6.3v2: Genome Wide Association Study Workflows v2

Kristina Hettne; Harish Dharuri; Marco Roos

This document describes the workflows developed during phase II of the project at the Human Genetics Department of the Leiden University Medical Centre (HG-LUMC) for interpreting results from genome-wide association (GWA) studies.

The main goal of this deliverable is to produce workflows. At the same time, we applied the tooling and best practices that are emerging from the project to aggregate the workflow and associated material as a preservable 'Research Object' (RO). A detailed description about the state of the current tooling can be found in D1.4v1.

Workflows form a crucial part of the data to populate the RO models and software in Wf4Ever, and the HG-LUMC is committed to producing good quality workflows that can be preserved. To promote re-use and combat workflow decay, we developed Best Practices for workflow design.

In this document, we describe workflows for interpreting GWA study data, Best Practices for workflow design and their relation to ROs. Finally, we characterize the workflows according to current state of workflow preservation and archived them according to the project tooling.

Wf4Ever Deliverable Identifier: oai:repo.wf4ever-project.org:42
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