Dataset Open Access

SARS-COV2 Spike Glycopeptide Mass-Retention Time PCDL database

Chalk, R; Greenland, W.; Moreira, T.; Coker, J.; Mukhopadhyay, S.; Williams, E.; Manning, C.; Bohstedt, T.; McCrorie, R.; Fernandez-Cid, A.; Burgess-Brown, N.


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  <identifier identifierType="DOI">10.5281/zenodo.3958218</identifier>
  <creators>
    <creator>
      <creatorName>Chalk, R</creatorName>
      <givenName>R</givenName>
      <familyName>Chalk</familyName>
      <affiliation>University of Oxford</affiliation>
    </creator>
    <creator>
      <creatorName>Greenland, W.</creatorName>
      <givenName>W.</givenName>
      <familyName>Greenland</familyName>
      <affiliation>Agilent Technologies</affiliation>
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    <creator>
      <creatorName>Moreira, T.</creatorName>
      <givenName>T.</givenName>
      <familyName>Moreira</familyName>
      <affiliation>University of Oxford</affiliation>
    </creator>
    <creator>
      <creatorName>Coker, J.</creatorName>
      <givenName>J.</givenName>
      <familyName>Coker</familyName>
      <affiliation>University of Oxford</affiliation>
    </creator>
    <creator>
      <creatorName>Mukhopadhyay, S.</creatorName>
      <givenName>S.</givenName>
      <familyName>Mukhopadhyay</familyName>
      <affiliation>University of Oxford</affiliation>
    </creator>
    <creator>
      <creatorName>Williams, E.</creatorName>
      <givenName>E.</givenName>
      <familyName>Williams</familyName>
      <affiliation>University of Oxford</affiliation>
    </creator>
    <creator>
      <creatorName>Manning, C.</creatorName>
      <givenName>C.</givenName>
      <familyName>Manning</familyName>
      <affiliation>University of Oxford</affiliation>
    </creator>
    <creator>
      <creatorName>Bohstedt, T.</creatorName>
      <givenName>T.</givenName>
      <familyName>Bohstedt</familyName>
      <affiliation>University of Oxford</affiliation>
    </creator>
    <creator>
      <creatorName>McCrorie, R.</creatorName>
      <givenName>R.</givenName>
      <familyName>McCrorie</familyName>
      <affiliation>University of Oxford</affiliation>
    </creator>
    <creator>
      <creatorName>Fernandez-Cid, A.</creatorName>
      <givenName>A.</givenName>
      <familyName>Fernandez-Cid</familyName>
      <affiliation>University of Oxford</affiliation>
    </creator>
    <creator>
      <creatorName>Burgess-Brown, N.</creatorName>
      <givenName>N.</givenName>
      <familyName>Burgess-Brown</familyName>
      <affiliation>University of Oxford</affiliation>
    </creator>
  </creators>
  <titles>
    <title>SARS-COV2 Spike Glycopeptide Mass-Retention Time PCDL database</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2020</publicationYear>
  <subjects>
    <subject>SARS-Cov2</subject>
    <subject>Spike</subject>
    <subject>RBD</subject>
    <subject>Glycoprotein</subject>
    <subject>Glycopeptide</subject>
    <subject>Glycan</subject>
    <subject>Mass Spectrometry</subject>
    <subject>HPLC</subject>
    <subject>Database</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2020-07-23</date>
  </dates>
  <language>en</language>
  <resourceType resourceTypeGeneral="Dataset"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/3958218</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.3958217</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsPartOf">https://zenodo.org/communities/covid-19</relatedIdentifier>
  </relatedIdentifiers>
  <version>1</version>
  <rightsList>
    <rights rightsURI="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;Contains accurate mass, HPLC retention time, peptide sequence, glycan structure and mass spectra for over 400 glycopeptides from elastase digestion of SARS-COV2 Spike antigen and receptor binding domain. The database is used as part of the Mass-Retention Time Fingerprinting method to characterise Spike glycans as described in the BioRxiv preprint &amp;ldquo;Identification, Mapping and Relative Quantitation of SARS-Cov2 Spike Glycopeptides by Mass-Retention Time Fingerprinting&amp;rdquo;&lt;/p&gt;</description>
  </descriptions>
  <fundingReferences>
    <fundingReference>
      <funderName>European Commission</funderName>
      <funderIdentifier funderIdentifierType="Crossref Funder ID">10.13039/501100000780</funderIdentifier>
      <awardNumber awardURI="info:eu-repo/grantAgreement/EC/FP7/115766/">115766</awardNumber>
      <awardTitle>Unrestricted Leveraging of Targets for Research Advancement and Drug Discovery</awardTitle>
    </fundingReference>
    <fundingReference>
      <funderName>Wellcome Trust</funderName>
      <funderIdentifier funderIdentifierType="Crossref Funder ID">10.13039/100004440</funderIdentifier>
      <awardNumber awardURI="info:eu-repo/grantAgreement/WT/Genetic+%26+Molecular+Sciences/106169/">106169</awardNumber>
      <awardTitle>A UK Hub to Catalyse Open Target Discovery.</awardTitle>
    </fundingReference>
  </fundingReferences>
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