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HopkinsIDD/phylosamp: phylosamp alpha release v0.1.1

shwohl; John Giles

First alpha release of the 'phlyosamp' R package. This package implements novel tools that estimate the probability of true transmission between two cases given phylogenetic linkage and the expected number of true transmission links in a sample. The package also contains functions that calculate the sample size needed to correctly identify true pairs at some particular rate.

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