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Published July 15, 2020 | Version 1.2.0
Software Open

nf-core/rnafusion: nf-core/rnafusion:1.2.0

Creators

  • 1. @SciLifeLab | Karolinska Institutet
  • 2. Science for Life Laboratory
  • 3. Karolinska Institutet & higsch
  • 4. Karolinska Institutet

Description

[1.2.0] nfcore/rnafusion - 2020/07/15

  • Fusion gene detection tools:
    • Arriba v1.2.0
    • Ericscript v0.5.5
    • Fusioncatcher v1.20
    • Pizzly v0.37.3
    • Squid v1.5
    • STAR-Fusion v1.8.1
  • Visualization tools:
    • Arriba v1.2.0
    • FusionInspector v2.2.1
  • Other tools:
    • fusion-report v2.1.3
    • FastQ v0.11.8
    • MultiQC v1.7
    • STAR aligner v2.7.1a
Added
  • Added social preview image #107
  • Simplified running the pipeline, better documentation
Changed
  • Upgrade fusion-report v2.1.2 to fusion-report v2.1.3
  • Upgrade fusion-report v2.1.1 to fusion-report v2.1.2
  • Upgrade fusion-report v2.1.0 to fusion-report v2.1.1
  • Upgrade Arriba v1.1.0 to Arriba v1.2.0
  • Upgrade fusion-report v2.0.2 to fusion-report v2.1.0
Fixed
  • Missing strip-components in download-references.nf/star-fusion #148
  • Missing version prefix for cdna #143
  • samtools missing header in empty file for FusionInspector ref
  • Removed profile from helper scripts #139
  • Wrong url path for Pfam-A.hmm.gz #140
Removed
  • Removed scripts/download-singularity-img.sh and download-singularity-img.nf as they are not necessary any more

Files

nf-core/rnafusion-1.2.0.zip

Files (465.3 kB)

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md5:b093e901f0de70c69000c860deea3fff
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Additional details

Related works

Is supplement to
https://github.com/nf-core/rnafusion/tree/1.2.0 (URL)