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qtl2pleio-1.3.0.zip

fboehm-qtl2pleio-890372f
- .Rbuildignore 373 Bytes
- .gitignore 96 Bytes
- .travis.yml 667 Bytes
- .zenodo.json 473 Bytes
- CONDUCT.md 1.4 kB
- CRAN-RELEASE 129 Bytes
- DESCRIPTION 1.4 kB
- Dockerfile 159 Bytes
- LICENSE 48 Bytes
- LICENSE.md 1.1 kB
- NAMESPACE 737 Bytes
- NEWS.md 4.2 kB
- R
  - RcppExports.R 2.0 kB
  - boot_pvl.R 8.2 kB
  - calc_Bhat.R 811 Bytes
  - calc_Sigma.R 640 Bytes
  - calc_covs.R 1.4 kB
  - calc_lrt_tib.R 859 Bytes
  - calc_profile_lods.R 2.0 kB
  - calc_sqrt_mat.R 313 Bytes
  - catch-routine-registration.R 285 Bytes
  - find_pleio_peak_tib.R 1.5 kB
  - fit1_pvl.R 2.5 kB
  - get_effects.R 1.2 kB
  - plot_pvl.R 1.4 kB
  - prep_mytab.R 1.6 kB
  - qtl2pleio-package.r 567 Bytes
  - rcpp_calc_Bhat.R 1.8 kB
  - rcpp_log_dmvnorm2.R 574 Bytes
  - scan_pvl.R 10.1 kB
  - sim1.R 781 Bytes
  - utils-pipe.R 142 Bytes
  - utils.R 7.0 kB
- README.Rmd 8.9 kB
- README.md 9.2 kB
- _pkgdown.yml 230 Bytes
- codecov.yml 15 Bytes
- codemeta.json 10.6 kB
- cran-comments.md 343 Bytes
- doc
  - bootstrap-cluster.R 506 Bytes
  - bootstrap-cluster.Rmd 7.0 kB
  - bootstrap-cluster.html 29.1 kB
  - d-variate-analysis.R 4.0 kB
  - d-variate-analysis.Rmd 9.6 kB
  - d-variate-analysis.html 81.9 kB
  - recla-analysis.R 5.6 kB
  - recla-analysis.Rmd 7.6 kB
  - recla-analysis.html 207.0 kB
- inst
  - CITATION 962 Bytes
- install.R 322 Bytes
- man
  - add_pmap.Rd 808 Bytes
  - boot_pvl.Rd 3.0 kB
  - calc_Bhat.Rd 866 Bytes
  - calc_Sigma.Rd 610 Bytes
  - calc_covs.Rd 938 Bytes
  - calc_invsqrt_mat.Rd 361 Bytes
  - calc_lrt_tib.Rd 675 Bytes
  - calc_profile_lods.Rd 539 Bytes
  - calc_sqrt_mat.Rd 336 Bytes
  - check_identical.Rd 509 Bytes
  - check_missingness.Rd 588 Bytes
  - figures
    - README-1d-lod-plots-1.png 40.3 kB
    - README-profile-plot-1.png 35.6 kB
  - find_pleio_peak_tib.Rd 1.2 kB
  - fit1_pvl.Rd 1.7 kB
  - get_effects.Rd 1.3 kB
  - make_id2keep.Rd 739 Bytes
  - pipe.Rd 213 Bytes
  - plot_pvl.Rd 713 Bytes
  - prep_X_list.Rd 955 Bytes
  - prep_mytab.Rd 542 Bytes
  - qtl2pleio.Rd 251 Bytes
  - rcpp_calc_Bhat.Rd 959 Bytes
  - rcpp_calc_Bhat2.Rd 941 Bytes
  - rcpp_log_dmvnorm2.Rd 476 Bytes
  - scan_pvl.Rd 4.4 kB
  - sim1.Rd 843 Bytes
  - subset_input.Rd 1.1 kB
  - subset_kinship.Rd 728 Bytes
- paper.bib 3.5 kB
- paper.md 3.6 kB
- qtl2pleio.Rproj 395 Bytes
- src
  - .gitignore 15 Bytes
  - RcppExports.cpp 12.3 kB
  - eigen_sqrt.cpp 1.1 kB
  - matrix.cpp 9.8 kB
  - matrix.h 2.9 kB
  - rcpp_ols.cpp 1.2 kB
  - rcppeigen.cpp 1.7 kB
  - test-example.cpp 1.1 kB
  - test-runner.cpp 247 Bytes
- tests
  - testthat
    - test-boot_pvl.R 1.1 kB
    - test-calc_Bhat.R 574 Bytes
    - test-calc_covs.R 2.3 kB
    - test-calc_lrt_tib.R 568 Bytes
    - test-cpp.R 94 Bytes
    - test-drop_depcols.R 1.9 kB
    - test-find_pleio_peak_tib.R 913 Bytes
    - test-make_id2keep.R 1.2 kB
    - test-prep_mytab.R 543 Bytes
    - test-rcpp_calc_Bhat.R 548 Bytes
    - test-rcpp_calc_Bhat2.R 849 Bytes
    - test-rcpp_log_dmvnorm2.R 361 Bytes
    - test-scan_pvl.R 2.5 kB
    - test-sim1.R 405 Bytes
    - test-subset_input.R 5.0 kB
  - testthat.R 62 Bytes
- vignettes
  - .gitignore 29 Bytes
  - bootstrap-cluster.Rmd 7.0 kB
  - d-variate-analysis.Rmd 9.6 kB
  - qtl2pleio.bib 1.9 kB
  - recla-analysis.Rmd 7.6 kB