qtl2pleio-1.3.0.zip
fboehm-qtl2pleio-890372f
.Rbuildignore
373 Bytes
.gitignore
96 Bytes
.travis.yml
667 Bytes
.zenodo.json
473 Bytes
CONDUCT.md
1.4 kB
CRAN-RELEASE
129 Bytes
DESCRIPTION
1.4 kB
Dockerfile
159 Bytes
LICENSE
48 Bytes
LICENSE.md
1.1 kB
NAMESPACE
737 Bytes
NEWS.md
4.2 kB
R
RcppExports.R
2.0 kB
boot_pvl.R
8.2 kB
calc_Bhat.R
811 Bytes
calc_Sigma.R
640 Bytes
calc_covs.R
1.4 kB
calc_lrt_tib.R
859 Bytes
calc_profile_lods.R
2.0 kB
calc_sqrt_mat.R
313 Bytes
catch-routine-registration.R
285 Bytes
find_pleio_peak_tib.R
1.5 kB
fit1_pvl.R
2.5 kB
get_effects.R
1.2 kB
plot_pvl.R
1.4 kB
prep_mytab.R
1.6 kB
qtl2pleio-package.r
567 Bytes
rcpp_calc_Bhat.R
1.8 kB
rcpp_log_dmvnorm2.R
574 Bytes
scan_pvl.R
10.1 kB
sim1.R
781 Bytes
utils-pipe.R
142 Bytes
utils.R
7.0 kB
README.Rmd
8.9 kB
README.md
9.2 kB
_pkgdown.yml
230 Bytes
codecov.yml
15 Bytes
codemeta.json
10.6 kB
cran-comments.md
343 Bytes
doc
bootstrap-cluster.R
506 Bytes
bootstrap-cluster.Rmd
7.0 kB
bootstrap-cluster.html
29.1 kB
d-variate-analysis.R
4.0 kB
d-variate-analysis.Rmd
9.6 kB
d-variate-analysis.html
81.9 kB
recla-analysis.R
5.6 kB
recla-analysis.Rmd
7.6 kB
recla-analysis.html
207.0 kB
inst
CITATION
962 Bytes
install.R
322 Bytes
man
add_pmap.Rd
808 Bytes
boot_pvl.Rd
3.0 kB
calc_Bhat.Rd
866 Bytes
calc_Sigma.Rd
610 Bytes
calc_covs.Rd
938 Bytes
calc_invsqrt_mat.Rd
361 Bytes
calc_lrt_tib.Rd
675 Bytes
calc_profile_lods.Rd
539 Bytes
calc_sqrt_mat.Rd
336 Bytes
check_identical.Rd
509 Bytes
check_missingness.Rd
588 Bytes
figures
README-1d-lod-plots-1.png
40.3 kB
README-profile-plot-1.png
35.6 kB
find_pleio_peak_tib.Rd
1.2 kB
fit1_pvl.Rd
1.7 kB
get_effects.Rd
1.3 kB
make_id2keep.Rd
739 Bytes
pipe.Rd
213 Bytes
plot_pvl.Rd
713 Bytes
prep_X_list.Rd
955 Bytes
prep_mytab.Rd
542 Bytes
qtl2pleio.Rd
251 Bytes
rcpp_calc_Bhat.Rd
959 Bytes
rcpp_calc_Bhat2.Rd
941 Bytes
rcpp_log_dmvnorm2.Rd
476 Bytes
scan_pvl.Rd
4.4 kB
sim1.Rd
843 Bytes
subset_input.Rd
1.1 kB
subset_kinship.Rd
728 Bytes
paper.bib
3.5 kB
paper.md
3.6 kB
qtl2pleio.Rproj
395 Bytes
src
.gitignore
15 Bytes
RcppExports.cpp
12.3 kB
eigen_sqrt.cpp
1.1 kB
matrix.cpp
9.8 kB
matrix.h
2.9 kB
rcpp_ols.cpp
1.2 kB
rcppeigen.cpp
1.7 kB
test-example.cpp
1.1 kB
test-runner.cpp
247 Bytes
tests
testthat
test-boot_pvl.R
1.1 kB
test-calc_Bhat.R
574 Bytes
test-calc_covs.R
2.3 kB
test-calc_lrt_tib.R
568 Bytes
test-cpp.R
94 Bytes
test-drop_depcols.R
1.9 kB
test-find_pleio_peak_tib.R
913 Bytes
test-make_id2keep.R
1.2 kB
test-prep_mytab.R
543 Bytes
test-rcpp_calc_Bhat.R
548 Bytes
test-rcpp_calc_Bhat2.R
849 Bytes
test-rcpp_log_dmvnorm2.R
361 Bytes
test-scan_pvl.R
2.5 kB
test-sim1.R
405 Bytes
test-subset_input.R
5.0 kB
testthat.R
62 Bytes
vignettes
.gitignore
29 Bytes
bootstrap-cluster.Rmd
7.0 kB
d-variate-analysis.Rmd
9.6 kB
qtl2pleio.bib
1.9 kB
recla-analysis.Rmd
7.6 kB