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cosanlab/nltools: 0.4.0

Luke Chang; Sam; Eshin Jolly; Jin Hyun Cheong; Anton Burnashev; Andy Chen; Marissa Clark; Seth Frey


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    <subfield code="a">New Functionality
&lt;ul&gt;
&lt;li&gt;Added new intersubject correlation (ISC) functionality. ISC function in stats module can compute different types of resampling tests (i.e., circular shifting, phase randomization, subject-wise bootstrapping. ISC method on Adjacency Class can perform subject-wise bootstrapping.&lt;/li&gt;
&lt;li&gt;Added new intersubject functional connectivity (ISFC) functionality. Uses leave-one-subject out averaging method.&lt;/li&gt;
&lt;li&gt;Added new dynamic intersubject phase synchrony (ISPS) functionality. Calculate length of average resultant vector, significance computed with parametric Rayleigh test.&lt;/li&gt;
&lt;li&gt;roi_to_brain is now much faster when using arrays.&lt;/li&gt;
&lt;li&gt;Added new timeseries permutation methods to correlation_permutation function (circle shifting and phase randomization)&lt;/li&gt;
&lt;li&gt;Brain_Data has a new &lt;code&gt;temporal_resample&lt;/code&gt; method to up and downsample timeseries&lt;/li&gt;
&lt;/ul&gt;
Bug Fixes
&lt;ul&gt;
&lt;li&gt;fixed smoothing bug&lt;/li&gt;
&lt;li&gt;temporary fix to plotting bug. due to change to matlotlib api, colorbars on brain_data plots are not working correctly. Turned them off by default for now.&lt;/li&gt;
&lt;li&gt;no longer pinning joblib to old version&lt;/li&gt;
&lt;/ul&gt;
Refactoring
&lt;ul&gt;
&lt;li&gt;updated and refactored align code.&lt;/li&gt;
&lt;/ul&gt;
Deprecated/Removed
&lt;ul&gt;
&lt;li&gt;Removed jackknife permutation method as we decided it wasn't working as we intended.&lt;/li&gt;
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