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cosanlab/nltools: 0.4.0

Luke Chang; Sam; Eshin Jolly; Jin Hyun Cheong; Anton Burnashev; Andy Chen; Marissa Clark; Seth Frey


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  <dc:creator>Luke Chang</dc:creator>
  <dc:creator>Sam</dc:creator>
  <dc:creator>Eshin Jolly</dc:creator>
  <dc:creator>Jin Hyun Cheong</dc:creator>
  <dc:creator>Anton Burnashev</dc:creator>
  <dc:creator>Andy Chen</dc:creator>
  <dc:creator>Marissa Clark</dc:creator>
  <dc:creator>Seth Frey</dc:creator>
  <dc:date>2020-07-01</dc:date>
  <dc:description>New Functionality

Added new intersubject correlation (ISC) functionality. ISC function in stats module can compute different types of resampling tests (i.e., circular shifting, phase randomization, subject-wise bootstrapping. ISC method on Adjacency Class can perform subject-wise bootstrapping.
Added new intersubject functional connectivity (ISFC) functionality. Uses leave-one-subject out averaging method.
Added new dynamic intersubject phase synchrony (ISPS) functionality. Calculate length of average resultant vector, significance computed with parametric Rayleigh test.
roi_to_brain is now much faster when using arrays.
Added new timeseries permutation methods to correlation_permutation function (circle shifting and phase randomization)
Brain_Data has a new temporal_resample method to up and downsample timeseries

Bug Fixes

fixed smoothing bug
temporary fix to plotting bug. due to change to matlotlib api, colorbars on brain_data plots are not working correctly. Turned them off by default for now.
no longer pinning joblib to old version

Refactoring

updated and refactored align code.

Deprecated/Removed

Removed jackknife permutation method as we decided it wasn't working as we intended.
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  <dc:identifier>https://zenodo.org/record/3924884</dc:identifier>
  <dc:identifier>10.5281/zenodo.3924884</dc:identifier>
  <dc:identifier>oai:zenodo.org:3924884</dc:identifier>
  <dc:relation>url:https://github.com/cosanlab/nltools/tree/0.4.0</dc:relation>
  <dc:relation>doi:10.5281/zenodo.2229812</dc:relation>
  <dc:rights>info:eu-repo/semantics/openAccess</dc:rights>
  <dc:title>cosanlab/nltools: 0.4.0</dc:title>
  <dc:type>info:eu-repo/semantics/other</dc:type>
  <dc:type>software</dc:type>
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