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cosanlab/nltools: 0.4.0

Luke Chang; Sam; Eshin Jolly; Jin Hyun Cheong; Anton Burnashev; Andy Chen; Marissa Clark; Seth Frey


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  <identifier identifierType="DOI">10.5281/zenodo.3924884</identifier>
  <creators>
    <creator>
      <creatorName>Luke Chang</creatorName>
      <affiliation>Dartmouth College</affiliation>
    </creator>
    <creator>
      <creatorName>Sam</creatorName>
    </creator>
    <creator>
      <creatorName>Eshin Jolly</creatorName>
    </creator>
    <creator>
      <creatorName>Jin Hyun Cheong</creatorName>
      <affiliation>Dartmouth College</affiliation>
    </creator>
    <creator>
      <creatorName>Anton Burnashev</creatorName>
      <affiliation>@stampsy</affiliation>
    </creator>
    <creator>
      <creatorName>Andy Chen</creatorName>
      <affiliation>National Taiwan University</affiliation>
    </creator>
    <creator>
      <creatorName>Marissa Clark</creatorName>
    </creator>
    <creator>
      <creatorName>Seth Frey</creatorName>
      <affiliation>University of California</affiliation>
    </creator>
  </creators>
  <titles>
    <title>cosanlab/nltools: 0.4.0</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2020</publicationYear>
  <dates>
    <date dateType="Issued">2020-07-01</date>
  </dates>
  <resourceType resourceTypeGeneral="Software"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/3924884</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsSupplementTo">https://github.com/cosanlab/nltools/tree/0.4.0</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.2229812</relatedIdentifier>
  </relatedIdentifiers>
  <version>0.4.0</version>
  <rightsList>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">New Functionality
&lt;ul&gt;
&lt;li&gt;Added new intersubject correlation (ISC) functionality. ISC function in stats module can compute different types of resampling tests (i.e., circular shifting, phase randomization, subject-wise bootstrapping. ISC method on Adjacency Class can perform subject-wise bootstrapping.&lt;/li&gt;
&lt;li&gt;Added new intersubject functional connectivity (ISFC) functionality. Uses leave-one-subject out averaging method.&lt;/li&gt;
&lt;li&gt;Added new dynamic intersubject phase synchrony (ISPS) functionality. Calculate length of average resultant vector, significance computed with parametric Rayleigh test.&lt;/li&gt;
&lt;li&gt;roi_to_brain is now much faster when using arrays.&lt;/li&gt;
&lt;li&gt;Added new timeseries permutation methods to correlation_permutation function (circle shifting and phase randomization)&lt;/li&gt;
&lt;li&gt;Brain_Data has a new &lt;code&gt;temporal_resample&lt;/code&gt; method to up and downsample timeseries&lt;/li&gt;
&lt;/ul&gt;
Bug Fixes
&lt;ul&gt;
&lt;li&gt;fixed smoothing bug&lt;/li&gt;
&lt;li&gt;temporary fix to plotting bug. due to change to matlotlib api, colorbars on brain_data plots are not working correctly. Turned them off by default for now.&lt;/li&gt;
&lt;li&gt;no longer pinning joblib to old version&lt;/li&gt;
&lt;/ul&gt;
Refactoring
&lt;ul&gt;
&lt;li&gt;updated and refactored align code.&lt;/li&gt;
&lt;/ul&gt;
Deprecated/Removed
&lt;ul&gt;
&lt;li&gt;Removed jackknife permutation method as we decided it wasn't working as we intended.&lt;/li&gt;
&lt;/ul&gt;</description>
  </descriptions>
</resource>
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