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multinma-v0.1.3.zip

dmphillippo-multinma-871dc37
- .Rbuildignore 243 Bytes
- .gitignore 206 Bytes
- .travis.yml 843 Bytes
- DESCRIPTION 1.7 kB
- NAMESPACE 3.0 kB
- NEWS.md 2.3 kB
- R
  - adapt_delta.R 800 Bytes
  - data.R 10.4 kB
  - default.R 871 Bytes
  - integration.R 19.3 kB
  - mcmc_array-class.R 2.4 kB
  - multinma-package.R 2.8 kB
  - nma.R 75.4 kB
  - nma_data-class.R 20.0 kB
  - nma_data.R 35.0 kB
  - nma_dic-class.R 15.7 kB
  - nma_dic.R 7.2 kB
  - nma_prior-class.R 3.2 kB
  - nma_summary-class.R 19.0 kB
  - predict.R 20.3 kB
  - priors.R 12.1 kB
  - ranks.R 10.0 kB
  - relative_effects.R 18.3 kB
  - s3_register.R 1.5 kB
  - stan_nma-class.R 28.8 kB
  - stanmodels.R 1.2 kB
  - theme_multinma.R 842 Bytes
  - zzz.R 827 Bytes
- README.Rmd 1.7 kB
- README.md 2.5 kB
- configure 117 Bytes
- configure.win 134 Bytes
- cran-comments.md 1.3 kB
- data
  - atrial_fibrillation.rda 1.8 kB
  - bcg_vaccine.rda 516 Bytes
  - blocker.rda 548 Bytes
  - diabetes.rda 1.0 kB
  - dietary_fat.rda 670 Bytes
  - parkinsons.rda 654 Bytes
  - plaque_psoriasis_agd.rda 1.4 kB
  - plaque_psoriasis_ipd.rda 34.5 kB
  - smoking.rda 672 Bytes
  - statins.rda 701 Bytes
  - thrombolytics.rda 925 Bytes
  - transfusion.rda 336 Bytes
- data-raw
  - atrial_fibrillation.R 934 Bytes
  - bcg_vaccine
    - bcg_vaccine.R 863 Bytes
    - bcg_vaccine.txt 392 Bytes
  - blocker
    - blocker.R 877 Bytes
    - blocker.txt 374 Bytes
  - diabetes
    - diabetes.R 1.0 kB
    - diabetes.txt 963 Bytes
  - dietary_fat
    - dietary_fat.R 827 Bytes
    - dietary_fat.txt 612 Bytes
  - parkinsons
    - parkinsons.R 965 Bytes
    - parkinsons.txt 383 Bytes
  - plaque_psoriasis
    - all_agd.csv 1.9 kB
    - dummy_ipd.csv 216.1 kB
    - plaque_psoriasis.R 2.4 kB
  - smoking
    - smoking.R 873 Bytes
    - smoking.txt 679 Bytes
  - statins
    - statins.R 952 Bytes
    - statins.txt 613 Bytes
  - thrombolytics
    - thrombolytics.R 1.1 kB
    - thrombolytics.txt 1.6 kB
  - transfusion.R 618 Bytes
- inst
  - CITATION 1.3 kB
  - REFERENCES.bib 12.0 kB
  - include
    - stan_meta_header.hpp 48 Bytes
  - stan
    - binomial_1par.stan 6.2 kB
    - binomial_2par.stan 7.9 kB
    - include
      - count_nonzero.stan 224 Bytes
      - data_common.stan 2.6 kB
      - generated_quantities_common.stan 2.2 kB
      - license.stan 646 Bytes
      - model_common.stan 1.3 kB
      - parameters_common.stan 223 Bytes
      - prior_select.stan 605 Bytes
      - transformed_data_common.stan 3.2 kB
      - transformed_parameters_common.stan 3.3 kB
    - normal.stan 4.9 kB
    - poisson.stan 3.9 kB
- man
  - Bernoulli.Rd 682 Bytes
  - GammaDist.Rd 973 Bytes
  - adapt_delta.Rd 902 Bytes
  - add_integration.Rd 5.5 kB
  - as.array.stan_nma.Rd 1.5 kB
  - as.stanfit.Rd 543 Bytes
  - atrial_fibrillation.Rd 1.0 kB
  - bcg_vaccine.Rd 867 Bytes
  - blocker.Rd 688 Bytes
  - combine_network.Rd 4.0 kB
  - default_values.Rd 854 Bytes
  - diabetes.Rd 771 Bytes
  - dic.Rd 2.3 kB
  - dietary_fat.Rd 762 Bytes
  - distr.Rd 1.8 kB
  - generalised_t.Rd 880 Bytes
  - graph_conversion.Rd 1.8 kB
  - is_network_connected.Rd 1.7 kB
  - logitNormal.Rd 902 Bytes
  - loo.Rd 700 Bytes
  - mcmc_array-class.Rd 2.5 kB
  - multinma-package.Rd 2.1 kB
  - nma.Rd 9.3 kB
  - nma_data-class.Rd 2.8 kB
  - nma_dic-class.Rd 916 Bytes
  - nma_prior-class.Rd 669 Bytes
  - nma_summary-class.Rd 1.8 kB
  - nma_summary-methods.Rd 1.8 kB
  - pairs.stan_nma.Rd 2.3 kB
  - parkinsons.Rd 1.4 kB
  - plaque_psoriasis.Rd 2.7 kB
  - plot.nma_data.Rd 2.6 kB
  - plot.nma_dic.Rd 5.1 kB
  - plot.nma_summary.Rd 4.5 kB
  - plot_integration_error.Rd 5.3 kB
  - plot_prior_posterior.Rd 2.6 kB
  - posterior_ranks.Rd 8.2 kB
  - predict.stan_nma.Rd 9.5 kB
  - print.nma_data.Rd 710 Bytes
  - print.nma_dic.Rd 512 Bytes
  - print.stan_nma.Rd 403 Bytes
  - priors.Rd 3.0 kB
  - random_effects.Rd 1.8 kB
  - relative_effects.Rd 6.9 kB
  - set_agd_arm.Rd 3.7 kB
  - set_agd_contrast.Rd 3.9 kB
  - set_ipd.Rd 2.8 kB
  - smoking.Rd 607 Bytes
  - stan_nma-class.Rd 1.6 kB
  - statins.Rd 904 Bytes
  - summary.nma_prior.Rd 1.2 kB
  - summary.stan_nma.Rd 3.2 kB
  - theme_multinma.Rd 601 Bytes
  - thrombolytics.Rd 956 Bytes
  - transfusion.Rd 810 Bytes
- man-roxygen
  - args-data_Surv.R 104 Bytes
  - args-data_common.R 636 Bytes
  - args-data_rE.R 164 Bytes
  - args-data_se.R 90 Bytes
  - args-details_sample_size.R 448 Bytes
  - args-details_trt_ref.R 585 Bytes
  - ex_plaque_psoriasis_integration.R 392 Bytes
  - ex_plaque_psoriasis_mlnmr.R 1.2 kB
  - ex_plaque_psoriasis_network.R 2.0 kB
  - ex_smoking_network.R 351 Bytes
  - ex_smoking_nma_fe.R 259 Bytes
  - ex_smoking_nma_re.R 326 Bytes
  - ex_smoking_nma_re_ume.R 421 Bytes
  - seealso_nma_data.R 133 Bytes
- multinma.Rproj 386 Bytes
- src
  - Makevars 719 Bytes
  - Makevars.win 424 Bytes
- tests
  - testthat
    - test-add_integration.R 11.2 kB
    - test-data_combine.R 9.3 kB
    - test-data_set.R 21.2 kB
    - test-example_atrial_fibrillation.R 15.1 kB
    - test-example_bcg_vaccine.R 9.3 kB
    - test-example_blocker.R 7.0 kB
    - test-example_diabetes.R 10.8 kB
    - test-example_dietary_fat.R 7.2 kB
    - test-example_parkinsons.R 31.2 kB
    - test-example_plaque_psoriasis.R 11.3 kB
    - test-example_smoking.R 10.0 kB
    - test-example_statins.R 7.1 kB
    - test-example_thrombolytics.R 8.9 kB
    - test-example_transfusion.R 5.5 kB
    - test-nma.R 16.3 kB
    - test-plot_integration_error.R 725 Bytes
    - test-posterior_ranks.R 3.3 kB
    - test-predict.R 3.2 kB
    - test-priors.R 2.3 kB
    - test-relative_effects.R 2.6 kB
  - testthat.R 60 Bytes
- vignettes
  - .gitignore 73 Bytes
  - children
    - knitr_setup.R 611 Bytes
  - example_atrial_fibrillation.Rmd 19.2 kB
  - example_atrial_fibrillation.html 1.1 MB
  - example_atrial_fibrillation.html.asis 137 Bytes
  - example_bcg_vaccine.Rmd 12.1 kB
  - example_bcg_vaccine.html 130.8 kB
  - example_bcg_vaccine.html.asis 116 Bytes
  - example_blocker.Rmd 9.0 kB
  - example_blocker.html 126.6 kB
  - example_blocker.html.asis 101 Bytes
  - example_diabetes.Rmd 13.8 kB
  - example_diabetes.html 608.8 kB
  - example_diabetes.html.asis 96 Bytes
  - example_dietary_fat.Rmd 9.2 kB
  - example_dietary_fat.html 214.8 kB
  - example_dietary_fat.html.asis 99 Bytes
  - example_parkinsons.Rmd 38.8 kB
  - example_parkinsons.html 1.4 MB
  - example_parkinsons.html.asis 134 Bytes
  - example_plaque_psoriasis.Rmd 19.5 kB
  - example_plaque_psoriasis.html 948.7 kB
  - example_plaque_psoriasis.html.asis 104 Bytes
  - example_smoking.Rmd 11.2 kB
  - example_smoking.html 293.3 kB
  - example_smoking.html.asis 105 Bytes
  - example_statins.Rmd 9.4 kB
  - example_statins.html 156.8 kB
  - example_statins.html.asis 120 Bytes
  - example_thrombolytics.Rmd 10.5 kB
  - example_thrombolytics.html 362.4 kB
  - example_thrombolytics.html.asis 111 Bytes
  - example_transfusion.Rmd 6.7 kB
  - example_transfusion.html 60.8 kB
  - example_transfusion.html.asis 154 Bytes
  - precompile.R 1.6 kB