IQ-TREE multicore version 1.4.4 for Mac OS X 64-bit built Aug 28 2016 Copyright (c) 2011-2015 Nguyen Lam Tung, Olga Chernomor, Arndt von Haeseler and Bui Quang Minh. Host: iMac-de-Kattina.local (AVX, 8 GB RAM) Command: ./iqtree-omp -s Alineamiento_AA_DAN_21_FFTNSI.fasta -st AA -m TEST -bb 1000 -nt 4 Seed: 313854 (Using SPRNG - Scalable Parallel Random Number Generator) Time: Wed Mar 8 10:54:45 2017 Kernel: AVX - 4 threads (4 CPU cores detected) Reading alignment file Alineamiento_AA_DAN_21_FFTNSI.fasta ... Fasta format detected Alignment most likely contains protein sequences Alignment has 424 sequences with 797 columns and 682 patterns (469 informative sites) Gap/Ambiguity Composition p-value 1 Alligator_mississippiensis_Grem1 76.91% passed 91.85% 2 Alligator_sinensis_Grem1 76.91% passed 92.08% 3 Gavialis_gangeticus_Grem1 76.91% passed 91.64% 4 Crocodylus_porosus_Grem1 77.04% passed 91.27% 5 Chicken_Chr5_Grem1 76.91% passed 75.36% 6 Duck_KB742443_Grem1 76.91% passed 85.09% 7 Zebra_finch_Chr5_Grem1 76.91% passed 86.65% 8 Apalone_spinifera_Grem1 77.16% passed 89.79% 9 Chinese_turtle_JH211398_Grem1 77.16% passed 89.79% 10 Chelonia_mydas_Grem1 76.91% passed 84.05% 11 Ambystoma_mexicanum_Grem1_KU882015 77.04% passed 90.16% 12 Alpaca_Sca22871_Grem1 76.91% passed 95.59% 13 Cat_B3_Grem1 76.91% passed 81.17% 14 Ferret_GL896926_Grem1 76.91% passed 81.17% 15 Chimpanzee_Grem1 76.91% passed 88.77% 16 Cow_Chr10_Grem1 76.91% passed 88.77% 17 Gibbon_Grem1 76.91% passed 88.77% 18 Human_Grem1 76.91% passed 88.77% 19 Macaque_Grem1 76.91% passed 88.77% 20 Mouse_Lemur_Grem1 76.91% passed 88.77% 21 Orangutan_Chr15_Grem1 76.91% passed 88.77% 22 Pig_Chr1_Grem1 76.91% passed 88.77% 23 Tarsier_Sca42364_Grem1 76.91% passed 88.77% 24 Vervet_Chr26_Grem1 76.91% passed 88.77% 25 Squirrel_JH393483_Grem1 76.91% passed 86.94% 26 Marmoset_Grem1 76.91% passed 90.76% 27 Sperm_whale_Grem2 76.91% passed 90.76% 28 Orcinus_orca_Grem2 76.91% passed 83.82% 29 Tursiops_truncatus_Grem2 76.91% passed 83.82% 30 Megabat_GeneScaffold_2480_Grem1 76.91% passed 93.09% 31 Olive_baboon_Chr7_Grem1 76.91% passed 90.79% 32 Microbat_GL429805_Grem1 76.91% passed 92.03% 33 Yangtze_River_dolphin_Grem2 76.91% passed 83.06% 34 Rabbit_Chr17_Grem1 76.91% passed 88.72% 35 Armadillo_JH566301_Grem1 76.91% passed 88.21% 36 Mouse_Chr2_Grem1 76.91% passed 75.13% 37 Rat_Chr3_Grem1 76.91% passed 84.94% 38 Bushbaby_Grem1 76.91% passed 93.15% 39 Horse_Chr1_Grem1 76.91% passed 91.10% 40 Elephant_sca64_Grem1 76.91% passed 95.26% 41 Opossum_Chr1_Grem1 76.91% passed 54.84% 42 Wallaby_Scaffold90556_Grem1 76.91% passed 61.51% 43 Clawed_Frog_GL172673_Grem1 77.16% passed 73.22% 44 Nanorana_parkeri_grem1_XM_018554201 77.16% passed 67.21% 45 Coelacanth_JH126706_Grem1 76.29% passed 81.10% 46 Anolis_lizard_Chr1_Grem1 77.42% passed 82.37% 47 Crotalus_mitchellii_pyrrhus_Grem1 77.29% passed 74.08% 48 Vipera_berus_berus_Grem1 77.29% passed 72.05% 49 Ophiophagus_hannah_AZIM01000676_Grem1 77.04% passed 74.22% 50 Pantherophis_guttatus_Grem1 77.16% passed 67.02% 51 Thamnophis_sirtalis_Grem1 77.16% passed 64.51% 52 Python_bivittatus_Grem1 77.16% passed 57.38% 53 Elephant_shark_Grem1 78.42% passed 86.86% 54 Amazon_molly_KI519640_Grem1 77.16% passed 57.33% 55 Platyfish_JH556816_grem1 77.16% passed 57.33% 56 Stickleback_groupXV_grem1 76.79% passed 49.03% 57 Tilapia_GL831192_grem1 77.16% passed 34.84% 58 Fugu_scaffold_23_Grem1b 77.16% passed 49.72% 59 Tetraodon_chr10_grem1 77.16% passed 45.01% 60 Medaka_Chr22_grem1 77.04% passed 41.17% 61 Cod_GeneScaffold_1263_Grem1b 77.42% passed 84.86% 62 Zebrafish_Chr17_Grem1b 77.29% passed 47.87% 63 Spotted_gar_LG7_Grem1a 76.66% passed 48.95% 64 Cave_fish_KB882243_Grem1b 75.16% failed 0.27% 65 Alligator_mississippiensis_Grem2 79.05% passed 43.29% 66 Alligator_sinensis_Grem2 79.05% passed 43.29% 67 Crocodylus_porosus_Grem2 79.05% passed 47.70% 68 Gavialis_gangeticus_Grem2 79.05% passed 47.70% 69 Apalone_spinifera_Grem2 78.92% passed 57.82% 70 Chinese_turtle_JH207276_Grem2 78.92% passed 64.07% 71 Chelonia_mydas_Grem2 78.92% passed 63.19% 72 Anolis_lizard_Chr1_Grem2 78.67% passed 65.04% 73 Crotalus_mitchellii_pyrrhus_Grem2 78.92% passed 87.65% 74 Ophiophagus_hannah_AZIM01002506_Grem2 78.92% passed 78.82% 75 Thamnophis_sirtalis_Grem2 78.92% passed 78.82% 76 Pantherophis_guttatus_Grem2 78.92% passed 67.06% 77 Vipera_berus_berus_JTGP01107853_Grem2 78.92% passed 89.30% 78 Python_bivittatus_Grem2 78.67% passed 54.25% 79 Ambystoma_mexicanum_Grem2_JQ903532 87.08% passed 41.66% 80 Chicken_Chr3_Grem2 78.92% passed 64.21% 81 Duck_KB743520_Grem2 78.92% passed 75.34% 82 Flycatcher_JH603172_Grem2 78.92% passed 84.84% 83 Zebra_Finch_Chr3_Grem2 78.92% passed 84.76% 84 Coelacanth_JH127049_Grem2 79.05% passed 31.89% 85 Armadillo_JH571788_Grem2 78.92% passed 69.78% 86 Bushbaby_GL873684_Grem2 78.92% passed 72.68% 87 Chimpanzee_Chr1_Grem2 78.92% passed 65.76% 88 Human_Chr1_Grem2 78.92% passed 65.76% 89 Macaque_Chr1_Grem2 78.92% passed 65.76% 90 Marmoset_Chr19_Grem2 78.92% passed 65.76% 91 Olive_baboon_Chr1_Grem2 78.92% passed 65.76% 92 Orangutan_Chr1_Grem2 78.92% passed 65.76% 93 Gibbon_GL397308_Grem2 78.92% passed 61.29% 94 Vervet_Chr25_Grem2 78.92% passed 65.12% 95 Guinea_pig_scaffold_12_Grem2 78.92% passed 61.70% 96 Squirrel_JH393336_Grem2 78.92% passed 65.47% 97 Mouse_Lemur_Sca2778_Grem2 78.92% passed 69.95% 98 Cat_F1_Grem2 78.92% passed 76.11% 99 Dog_Chr7_Grem2 78.92% passed 76.11% 100 Megabat_GeneScaffold_2375_Grem2 78.92% passed 69.52% 101 Ferret_GL896953_Grem2 79.05% passed 79.29% 102 Mouse_Chr1_Grem2 78.92% passed 89.23% 103 Rat_Chr13_Grem2 78.92% passed 91.87% 104 Tarsier_Sca85071_Grem2 78.92% passed 69.36% 105 Opossum_Chr2_Grem2 78.92% passed 55.33% 106 Kangaroo_rat_Sca512_Grem2 78.67% passed 88.17% 107 Elephant_Sca16_Grem2 78.67% passed 40.33% 108 Platypus_Ultra67_Grem2 78.92% passed 67.10% 109 Spotted_gar_LG16_Grem2 79.17% passed 52.23% 110 Zebrafish_Chr12_Grem2b 79.17% passed 12.99% 111 Cave_fish_KB882279_grem2 79.17% passed 68.02% 112 Elephant_shark_Grem2 79.17% passed 62.77% 113 Rabbit_Chr16_Grem2 83.94% passed 88.30% 114 Cod_GeneScaffold_119_Grem2 77.67% passed 49.80% 115 Fugu_scaffold_121_Grem2 78.54% passed 75.58% 116 Tetraodon_Chr17_grem2 75.91% passed 59.09% 117 Tilapia_GL831135_grem2 75.91% passed 73.09% 118 Medaka_Chr15_grem2 75.66% passed 84.16% 119 Amazon_molly_KI519622_grem2 75.91% passed 74.05% 120 Platyfish_JH556897_grem2 75.91% passed 74.30% 121 Stickleback_groupVI_grem2 75.91% passed 59.86% 122 Zebrafish_Chr17_Grem2 75.53% passed 38.32% 123 Cave_fish_KB882084_grem2 75.53% passed 28.97% 124 Branchiostoma_floridae_XM_002604420_gremlin 82.06% passed 48.45% 125 Branchiostoma_lanceolatum 83.06% passed 21.68% 126 Branchiostoma_belcheri_XM_019770478_Grem 62.61% failed 0.00% 127 Alpaca_GeneScaffold_3060_Grem2 78.92% passed 89.39% 128 Camelus_bactrianus_Grem2 78.92% passed 89.39% 129 Camelus_dromedarius_Grem2 78.92% passed 90.79% 130 Pig_Chr10_Grem2_T1 79.17% passed 89.85% 131 Pig_Chr10_Grem2_T2 79.17% passed 93.44% 132 Cod_GeneScaffold_1426_Grem1a 77.79% passed 11.44% 133 Fugu_scaffold_78_Grem1a 77.54% passed 77.24% 134 Tilapia_GL831178_grem1 77.54% passed 68.17% 135 Medaka_Chr24_grem1 78.42% passed 51.33% 136 Zebrafish_Chr19_Grem1a 77.79% passed 86.33% 137 Zebrafish_Chr20_Grem1a 77.79% passed 86.33% 138 Lamprey_Grem2 78.54% passed 33.69% 139 Cave_fish_KB871837_Grem1 78.67% passed 83.07% 140 Coelacanth_JH126578_Grem3 79.05% passed 94.42% 141 Elephant_shark_XM_007911063_Grem3 79.80% passed 49.42% 142 Spotted_gar_AHAT01029465_Grem3 82.69% failed 3.26% 143 Lamprey_Grem1 81.81% failed 2.13% 144 Ciona_intestinalis_NM_001078208_GREM 66.62% failed 0.52% 145 Amazon_molly_KI520192_NBL1_minos1 76.16% failed 1.14% 146 Platyfish_JH557372_NBL1_minos1 76.16% failed 1.34% 147 Medaka_Chr5_NBL1_minos1 76.54% passed 38.73% 148 Tilapia_GL831146_NBL1_minos1 76.54% passed 26.84% 149 Cod_GeneScaffold_168_NBL1_minos1 76.41% passed 58.31% 150 Stickleback_scaffold_27_NBL1_minos1 76.66% passed 11.00% 151 Fugu_scaffold_87_NBL1_minos1 76.29% failed 4.44% 152 Tetraodon_Chr11_NBL1_minos1 76.04% failed 0.78% 153 American_alligator_NBL1 77.67% passed 9.42% 154 Chinese_alligator_NBL1 77.67% passed 9.42% 155 Gharial_NBL1 77.67% passed 9.42% 156 Australian_saltwater_crocodile_NBL1 77.67% passed 9.62% 157 Chicken_Chr21_NBL1 77.67% passed 9.82% 158 Turkey_Chr23_NBL1 77.67% passed 9.82% 159 Duck_KB742757_NBL1 77.67% passed 18.44% 160 Zebrafinch_Chr21_random_NBL1 77.42% failed 2.07% 161 Chinese_turtle_JH206644_NBL1 82.31% passed 49.18% 162 Painted_turtle_NBL1 75.41% passed 20.31% 163 Flycatcher_JH603230_NBL1 77.42% passed 5.63% 164 Nanorana_parkeri_NBL1_XM_018574093 86.45% passed 25.53% 165 Armadillo_JH568085_NBL1 78.42% passed 5.17% 166 Bushbaby_GL873528_NBL1 77.92% passed 16.89% 167 Gibbon_GL397339_NBL1 72.90% failed 4.76% 168 Human_Chr1_NBL1 72.90% failed 4.32% 169 Gorilla_Chr1_NBL1 74.91% failed 3.62% 170 Orangutan_Chr1_NBL1 77.29% failed 2.91% 171 Macaque_Chr1_NBL1 72.90% failed 3.82% 172 Vervet_Chr20_NBL1 72.90% failed 3.63% 173 Olive_baboon_Chr1_NBL1 72.90% failed 1.18% 174 Marmoset_Chr7_NBL1 72.90% failed 1.05% 175 Mouse_lemur_KQ055787_NBL1 73.53% passed 8.45% 176 Cat_C1_NBL1 77.92% passed 12.96% 177 Dog_Chr2_NBL1 78.04% passed 7.96% 178 Ferret_GL896903_NBL1 78.04% passed 11.71% 179 Malayan_pangolin_NBL1 77.16% failed 1.32% 180 Panda_GL192439_NBL1 77.92% passed 8.61% 181 Cow_Chr2_NBL1 77.92% failed 2.69% 182 Sheep_Chr2_NBL1 78.04% failed 1.20% 183 Dolphin_GeneScaffold_2157_NBL1 77.92% passed 6.98% 184 Elephant_scaffold_26_NBL1 77.42% failed 3.61% 185 Hyrax_GeneScaffold_6102_NBL1 77.42% passed 9.36% 186 Guinea_pig_scaffold_25_NBL1 78.92% passed 26.80% 187 Squirrel_JH393284_NBL1 73.65% failed 0.84% 188 Horse_Chr2_NBL1 77.42% failed 1.09% 189 Mouse_Chr4_NBL1 78.92% passed 8.60% 190 Rat_Chr5_NBL1 77.54% passed 6.06% 191 Pig_Chr6_NBL1 77.92% failed 2.96% 192 Clawed_frog_GL173519_NBL1 77.92% passed 80.35% 193 Coelacanth_JH127591_NBL1 77.04% failed 1.27% 194 Tasmanian_Devil_GL849743_NBL1 78.67% passed 15.78% 195 Wallaby_NBL1 78.67% passed 15.78% 196 Anole_lizard_GL344078_NBL1 76.54% failed 2.08% 197 Green_turtle_NBL1 81.43% passed 86.27% 198 Elephant_shark_NBL1 77.79% passed 25.45% 199 Burmese_phyton_NBL1 78.04% passed 6.10% 200 Spotted_gar_LG25_NBL1_minos1 78.42% passed 12.82% 201 Common_garter_snake_NBL1 79.55% passed 14.59% 202 Taiwan_habu_NBL1 79.17% passed 12.91% 203 DANRE14363_HOG_0128444_Danio_rerio_NBL1 77.16% failed 2.57% 204 Branchiostoma_lanceolatum_JX945167_NBL1 87.83% passed 11.17% 205 Branchiostoma_belcheri_XM_019781720_NBL1 80.80% passed 22.10% 206 Branchiostoma_floridae_cerberus_EU670254 58.47% failed 0.08% 207 Branchiostoma_belcheri_XM_019776829_Cer 58.34% failed 0.02% 208 Alpaca_GeneScaffold_3534_Cer1 78.80% passed 5.32% 209 Cat_D4_Cer1 66.12% passed 11.16% 210 Dog_Chr11_Cer1 66.12% failed 2.50% 211 Panda_GL192451_Cer1 66.00% failed 1.21% 212 Horse_Chr23_Cer1 65.75% failed 1.59% 213 Malayan_pangolin_CER1 66.00% failed 2.45% 214 Cow_Chr8_Cer1 65.75% failed 1.37% 215 Sheep_Chr2_Cer1 65.75% failed 2.23% 216 Bushbaby_GL873525_Cer1 66.50% passed 7.37% 217 Mouse_lemur_KQ053883_Cer1 66.50% failed 4.72% 218 Chimpanzee_Chr9_Cer1 66.50% passed 7.92% 219 Gorilla_Chr9_Cer1 66.50% passed 9.43% 220 Human_Chr9_Cer1 66.50% passed 13.67% 221 Gibbon_GL397279_cer1 66.50% passed 11.08% 222 Orangutan_Chr9_Cer1 72.77% passed 28.86% 223 Macaque_Chr15_Cer1 66.50% passed 11.42% 224 Olive_baboon_Chr15_Cer1 66.25% passed 11.46% 225 Vervet_Chr12_Cer1 66.50% passed 9.50% 226 Marmoset_Chr1_Cer1 66.50% passed 16.27% 227 Pika_GeneScaffold_2851_Cer1 66.50% failed 3.00% 228 Rabbit_Chr1_Cer1 66.50% passed 6.39% 229 Elephant_scaffold_6_Cer1 65.75% failed 3.85% 230 Megabat_GeneScaffold_4036_Cer1 69.39% failed 3.12% 231 Microbat_GL429846_Cer1 65.50% failed 0.82% 232 Kangaroo_rat_GeneScaffold_5589_Cer1 66.50% failed 2.68% 233 Squirrel_JH393349_Cer1 66.50% passed 12.86% 234 Shrew_GeneScaffold_5957_Cer1 65.75% failed 2.16% 235 Guinea_pig_scaffold_21_Cer1 66.88% passed 10.81% 236 Armadillo_JH569164_Cer1 65.87% passed 20.11% 237 Tarsier_scaffold_10832_Cer1 68.76% failed 4.65% 238 Mouse_Chr4_Cer1 65.87% passed 33.12% 239 Rat_Chr5_Cer1 66.50% passed 55.58% 240 Tasmanian_devil_GL841569_Cer1 67.50% failed 4.70% 241 Wallaby_Cer1 67.50% failed 4.70% 242 American_alligator_Cer1 65.62% passed 29.04% 243 Chinese_alligator_Cer1 65.62% passed 29.63% 244 Gharial_Cer1 65.62% passed 30.25% 245 Crocodylus_porosus_Cer1 65.62% passed 30.39% 246 Chinese_turtle_JH207295_Cer1 65.50% failed 0.06% 247 Green_turtle_Cer1 65.50% passed 7.32% 248 Painted_turtle_Cer1 66.12% passed 9.49% 249 Chicken_ChrZ_Cer1 65.87% passed 17.79% 250 Duck_KB743030_Cer1 65.75% passed 20.26% 251 Flycatcher_JH603260_Cer1 65.75% failed 1.48% 252 Zebrafinch_ChrZ_Cer1 66.62% failed 3.22% 253 Anole_lizard_Chr2_Cer1 67.50% passed 18.48% 254 Gekko_Cer1 67.88% passed 55.30% 255 Burmese_python_Cer1 70.01% passed 36.26% 256 Common_garter_snake_Cer1 68.38% failed 0.10% 257 Coelacanth_JH127115_Cer1 67.38% passed 7.38% 258 Elephant_shark_Cer1 66.50% passed 13.30% 259 Clawed_frog_Cer1 65.37% failed 0.00% 260 Nanorana_parkeri_Cer1_XM_018556476 68.01% failed 0.08% 261 Bushbaby_GL873646_Cer2 77.42% passed 5.92% 262 Cat_JH408373_Cer2 76.16% failed 1.51% 263 Dog_Chr20_Cer2 76.16% failed 0.04% 264 Panda_GL192799_Cer2 76.16% failed 0.15% 265 Megabat_GeneScaffold_3312_Cer2 77.04% failed 0.56% 266 Malayan_pangolin_Cer2 76.16% failed 0.36% 267 Chimpanzee_Chr19_Cer2 76.29% failed 0.42% 268 Human_Chr19_Cer2 76.29% failed 0.53% 269 Gorilla_Chr19_Cer2 76.29% failed 0.26% 270 Gibbon_GL397381_Cer2 76.29% failed 1.39% 271 Orangutan_Chr19_Cer2 76.29% failed 0.38% 272 Macaque_Chr19_Cer2 76.29% failed 1.15% 273 Olive_baboon_Chr19_Cer2 76.29% failed 1.15% 274 Vervet_Chr6_Cer2 76.29% failed 2.04% 275 Marmoset_Chr22_Cer2 76.29% failed 0.21% 276 Mouse_lemur_KQ056147_Cer2 76.79% failed 0.00% 277 Squirrel_JH393469_Cer2 78.67% failed 0.45% 278 Elephant_scaffold_26_Cer2 76.04% failed 0.12% 279 Hyrax_GeneScaffold_6392_Cer2 75.53% failed 0.08% 280 Horse_Chr7_Cer2 77.54% failed 0.00% 281 Mouse_Chr8_Cer2 76.79% failed 0.88% 282 Rat_Chr19_Cer2 76.91% failed 0.44% 283 Rabbit_AAGW02083897_Cer2 75.91% failed 0.17% 284 Kangaroo_rat_scaffold_6795_Cer2 76.79% failed 0.09% 285 Guinea_pig_scaffold_42_Cer2 77.67% failed 0.01% 286 Opossum_Chr3_Cer2 75.53% passed 29.21% 287 Tasmanian_devil_GL841415_Cer2 75.03% passed 9.36% 288 Wallaby_Scaffold84375_Cer2 75.28% passed 18.27% 289 Nanorana_parkeri_DAND5_XM_018574465 71.89% passed 14.21% 290 Amazon_molly_KI519653_Cer2 68.13% failed 2.11% 291 Platyfish_JH556907_Cer2 68.13% passed 17.35% 292 Tilapia_GL831193_Cer2 68.13% passed 45.29% 293 Medaka_Chr1_Cer2 68.13% passed 26.03% 294 Stickleback_groupIX_Cer2 68.13% failed 0.94% 295 Fugu_scaffold_207_Cer2 68.13% failed 0.01% 296 Tetraodon_Chr18_cer2 68.26% failed 0.00% 297 Cavefish_KB882101_Cer2 70.51% failed 1.00% 298 Zebrafish_Chr1_Cer2 69.51% passed 26.43% 299 Spotted_gar_LG6_cer2 68.76% failed 0.00% 300 Coelacanth_JH126758_Cer2 73.15% passed 10.89% 301 Alligator_mississippiensis_SOST 73.15% passed 68.04% 302 Alligator_sinensis_SOST 73.78% passed 74.53% 303 Chicken_Chr27_SOST 73.27% passed 61.05% 304 Turkey_Chr29_SOST 73.27% passed 56.06% 305 Duck_KB743915_SOST 73.27% passed 65.12% 306 Chelonia_mydas_SOST 73.27% passed 72.57% 307 Painted_turtle_SOST 73.15% passed 40.48% 308 Chinese_Turtle_JH209439_SOST 73.27% passed 57.55% 309 Flycatcher_JH603370_SOST 73.27% passed 94.40% 310 Zebrafinch_Chr27_SOST 73.27% passed 95.48% 311 Anole_lizard_Chr6_SOST 73.15% passed 89.72% 312 Burmese_python_SOST 72.02% passed 96.49% 313 Common_garter_snake_SOST 72.02% passed 74.20% 314 Coelacanth_JH127204_SOST 73.27% passed 53.88% 315 Nanorana_parkeri_SOST_XM_018566240 73.27% passed 41.21% 316 Alpaca_GeneScaffold_2916_SOST 81.56% passed 76.84% 317 Armadillo_JH569955_SOST 73.27% passed 32.42% 318 Bushbaby_GL873537_SOST 73.27% passed 14.92% 319 Dog_Chr9_SOST 73.27% passed 6.47% 320 Chimpanzee_Chr17_SOST 73.27% passed 20.37% 321 Gorilla_Chr5_SOST 73.27% passed 20.37% 322 Orangutan_Chr17_SOST 73.27% passed 14.19% 323 Human_Chr17_SOST 73.27% passed 22.98% 324 Gibbon_GL397331_SOST 73.27% passed 22.74% 325 Olive_baboon_Chr16_SOST 73.27% passed 9.41% 326 Vervet_Chr16_SOST 73.27% passed 6.89% 327 Ferret_GL897072_SOST 73.27% passed 5.75% 328 Microbat_GL429867_SOST 73.27% passed 5.83% 329 Pangolin_SOST 73.40% passed 53.56% 330 Cow_Chr19_SOST 73.27% passed 12.80% 331 Pig_Chr12_SOST 73.27% passed 17.66% 332 Panda_GL192699_SOST 77.04% passed 11.34% 333 Rabbit_Chr19_SOST 73.27% passed 11.39% 334 Squirrel_JH393351_SOST 73.27% passed 20.25% 335 Elephant_scaffold_31_SOST 73.27% passed 27.31% 336 Mouse_Chr11_SOST 73.27% passed 6.14% 337 Rat_Chr10_SOST 73.27% passed 19.37% 338 Tasmanian_devil_GL856823_SOST 73.65% passed 86.03% 339 Wallaby_Scaffold23929_SOST 73.15% passed 89.94% 340 Guinea_pig_scaffold_67_SOST 74.65% failed 1.31% 341 Amazon_molly_KI519617_SOST 73.40% failed 0.02% 342 Platyfish_JH556661_SOST 73.40% failed 0.02% 343 Tilapia_GL831200_SOST 72.27% failed 0.47% 344 Medaka_Chr19_SOST 73.65% failed 0.83% 345 Stickleback_groupV_SOST 77.29% passed 56.99% 346 Fugu_scaffold_235_SOST 73.65% passed 8.27% 347 Tetraodon_Chr2_SOST 72.90% failed 1.41% 348 Spotted_gar_LG15_SOST 73.65% passed 27.87% 349 Cavefish_KB882270_SOST 72.02% passed 5.05% 350 Zebra_fish_Chr12_SOST 74.03% passed 46.57% 351 Elephant_shark_SOST 73.27% passed 29.22% 352 Alpaca_GeneScaffold_2806_SOSTDC1 74.15% passed 92.18% 353 Pig_Chr9_SOSTDC1 74.15% passed 84.91% 354 Pig_GL892750_ENSSSCG00000021126_SOSTDC1 74.15% passed 84.91% 355 Bushbaby_GL873524_SOSTDC1 74.15% passed 95.60% 356 Guinea_pig_scaffold_31_SOSTDC1 74.15% passed 93.74% 357 Kangaroo_rat_scaffold_20260_SOSTDC1 75.91% passed 91.03% 358 Squirrel_JH393356_SOSTDC1 74.15% passed 92.19% 359 Shrew_scaffold_219708_SOSTDC1 74.15% passed 96.34% 360 Cat_A2_SOSTDC1 74.15% passed 94.38% 361 Mouse_lemur_KQ054994_SOSTDC1 74.15% passed 94.45% 362 Ferret_GL896907_SOSTDC1 74.15% passed 90.56% 363 Panda_GL192533_SOSTDC1 74.15% passed 95.19% 364 Olive_baboon_Chr3_SOSTDC1 74.15% passed 94.45% 365 Megabat_GeneScaffold_4025_SOSTDC1 74.15% passed 92.21% 366 Chimpanzee_Chr7_SOSTDC1 71.14% passed 97.89% 367 Human_Chr7_SOSTDC1 71.14% passed 97.89% 368 Orangutan_Chr7_SOSTDC1 71.14% passed 96.11% 369 Macaque_Chr3_SOSTDC1 71.14% passed 98.11% 370 Vervet_Chr21_SOSTDC1 71.14% passed 98.11% 371 Gibbon_GL397261_SOSTDC1 71.14% passed 96.77% 372 Marmoset_Chr8_SOSTDC1 71.14% passed 98.42% 373 Gorilla_Chr7_SOSTDC1 71.14% passed 98.69% 374 Dolphin_GeneScaffold_3564_SOSTDC1 74.15% passed 96.65% 375 Pangolin_SOSTDC1 74.15% passed 95.64% 376 Tree_Shrew_scaffold_120948_SOSTDC1 74.15% passed 69.93% 377 Cow_Chr4_SOSTDC1 74.15% passed 98.96% 378 Sheep_Chr4_SOSTDC1 74.15% passed 98.49% 379 Microbat_GL429782_SOSTDC1 74.15% passed 94.74% 380 Hyrax_scaffold_4685_SOSTDC1 74.15% passed 90.71% 381 Dog_Chr14_SOSTDC1 71.14% passed 99.20% 382 Horse_Chr4_SOSTDC1 71.14% passed 83.29% 383 Tarsier_scaffold_9127_SOSTDC1 74.15% passed 88.70% 384 Armadillo_JH569938_SOSTDC1 74.15% passed 96.23% 385 Mouse_Chr12_SOSTDC1 74.15% passed 81.01% 386 Rat_Chr6_SOSTDC1 71.14% passed 87.26% 387 Elephant_scaffold_5_SOSTDC1 74.15% passed 75.64% 388 Platypus_Contig3940_SOSTDC1 74.15% passed 89.24% 389 Rabbit_GL018710_SOSTDC1 74.15% passed 92.28% 390 Chicken_Chr2_SOSTDC1_T2 74.15% passed 32.44% 391 Turkey_Chr6_SOSTDC1 71.14% passed 28.80% 392 Duck_KB742773_SOSTDC1 78.80% passed 89.61% 393 Flycatcher_JH603174_SOSTDC1 74.15% passed 34.46% 394 Zebra_Finch_Chr2_SOSTDC1 74.15% passed 34.46% 395 Green_sea_turtle_SOSTDC1 74.15% passed 79.26% 396 Western_painted_turtle_SOSTDC1 69.01% passed 68.93% 397 Chinese_turtle_JH224654_SOSTDC1 74.78% passed 63.36% 398 American_alligator_SOSTDC1 74.40% passed 74.21% 399 Chinese_alligator_SOSTDC1 74.40% passed 78.64% 400 Gharial_SOSTDC1 74.40% passed 82.14% 401 Anole_lizard_Chr6_SOSTDC1 74.15% passed 91.97% 402 Burmese_python_SOSTDC1 74.40% passed 80.60% 403 Common_garter_snake_SOSTDC1 74.65% passed 78.57% 404 Opossum_Chr8_SOSTDC1 74.15% passed 33.77% 405 Wallaby_Scaffold55204_SOSTDC1 74.15% passed 72.61% 406 Coelacanth_JH126954_SOSTDC1 73.15% passed 49.96% 407 Chicken_Chr2_SOSTDC1_T1 74.15% passed 13.21% 408 Clawed_frog_GL172688_SOSTDC1 73.15% passed 37.82% 409 Nanorana_parkeri_SOSTDC1_XM_018568959 73.78% passed 6.39% 410 Spotted_gar_LG11_SOSTDC1a 72.90% passed 18.56% 411 Elephant_shark_SOSTDC1 72.52% passed 46.35% 412 Cave_fish_KB882124_SOSTDC1b 76.54% passed 7.56% 413 Zebrafish_Chr19_SOSTDC1b 74.40% passed 28.05% 414 Amazon_molly_KI519860_SOSTDC1a 72.77% passed 46.34% 415 Platyfish_JH556697_SOSTDC1a 73.02% passed 42.92% 416 Medaka_Chr16_SOSTDC1a 72.65% passed 33.39% 417 Tilapia_GL831220_SOSTDC1a 72.77% passed 57.53% 418 Cod_GeneScaffold_2527_SOSTDC1a 72.40% passed 90.51% 419 Zebrafish_Chr15_SOSTDC1a 74.91% passed 34.18% 420 Sea_lamprey_SOST_ENSPMAG00000006489 85.07% passed 13.39% 421 Stickleback_scaffold_130_SOSTDC1b 74.03% passed 9.33% 422 Tilapia_GL831658_SOSTDC1b 74.40% failed 2.43% 423 Cavefish_KB871709_SOSTDC1a 71.52% passed 10.10% 424 Branchiostoma_belcheri_XM_019761920_SOST 72.27% failed 0.54% WARNING: 424 sequences contain more than 50% gaps/ambiguity **** TOTAL 74.75% 90 sequences failed composition chi2 test (p-value<5%; df=19) NOTE: 13 identical sequences (see below) will be ignored for subsequent analysis NOTE: Gibbon_Grem1 (identical to Chimpanzee_Grem1) is ignored but added at the end NOTE: Human_Grem1 (identical to Chimpanzee_Grem1) is ignored but added at the end NOTE: Macaque_Grem1 (identical to Chimpanzee_Grem1) is ignored but added at the end NOTE: Mouse_Lemur_Grem1 (identical to Chimpanzee_Grem1) is ignored but added at the end NOTE: Orangutan_Chr15_Grem1 (identical to Chimpanzee_Grem1) is ignored but added at the end NOTE: Pig_Chr1_Grem1 (identical to Chimpanzee_Grem1) is ignored but added at the end NOTE: Tarsier_Sca42364_Grem1 (identical to Chimpanzee_Grem1) is ignored but added at the end NOTE: Vervet_Chr26_Grem1 (identical to Chimpanzee_Grem1) is ignored but added at the end NOTE: Macaque_Chr1_Grem2 (identical to Chimpanzee_Chr1_Grem2) is ignored but added at the end NOTE: Marmoset_Chr19_Grem2 (identical to Chimpanzee_Chr1_Grem2) is ignored but added at the end NOTE: Olive_baboon_Chr1_Grem2 (identical to Chimpanzee_Chr1_Grem2) is ignored but added at the end NOTE: Orangutan_Chr1_Grem2 (identical to Chimpanzee_Chr1_Grem2) is ignored but added at the end NOTE: Gharial_NBL1 (identical to American_alligator_NBL1) is ignored but added at the end Create initial parsimony tree by phylogenetic likelihood library (PLL)... 0.329 seconds NOTE: MODEL SELECTION REQUIRES 181 MB MEMORY! Testing 144 protein models (sample size: 797) ... No. Model -LnL df AIC AICc BIC 1 Dayhoff 54529.711 819 110697.422 1453857.422 114531.042 2 Dayhoff+I 54457.551 820 110555.103 1456995.103 114393.403 3 Dayhoff+G4 52913.669 820 107467.338 1453907.338 111305.639 4 Dayhoff+I+G4 52898.799 821 107439.598 1457163.598 111282.580 5 Dayhoff+F 54264.918 838 110205.836 1516369.836 114128.392 6 Dayhoff+F+I 54195.333 839 110068.666 1519588.666 113995.903 7 Dayhoff+F+G4 52687.881 839 107053.762 1516573.762 110980.999 8 Dayhoff+F+I+G4 52673.797 840 107027.594 1519907.594 110959.512 9 mtMAM 59090.442 819 119818.883 1462978.883 123652.503 10 mtMAM+I 58959.396 820 119558.792 1465998.792 123397.093 11 mtMAM+G4 55994.582 820 113629.163 1460069.163 117467.464 12 mtMAM+I+G4 55984.121 821 113610.241 1463334.241 117453.223 13 mtMAM+F 56342.840 838 114361.679 1520525.679 118284.235 14 mtMAM+F+I 56206.406 839 114090.812 1523610.812 118018.049 15 mtMAM+F+G4 53856.191 839 109390.382 1518910.382 113317.619 16 mtMAM+F+I+G4 53834.282 840 109348.564 1522228.564 113280.482 17 JTT 53282.582 819 108203.164 1451363.164 112036.784 18 JTT+I 53181.167 820 108002.333 1454442.333 111840.634 19 JTT+G4 51709.184 820 105058.367 1451498.367 108896.668 20 JTT+I+G4 51687.944 821 105017.888 1454741.888 108860.870 21 JTT+F 53330.483 838 108336.966 1514500.966 112259.522 22 JTT+F+I 53228.905 839 108135.810 1517655.810 112063.047 23 JTT+F+G4 51767.208 839 105212.417 1514732.417 109139.654 24 JTT+F+I+G4 51742.703 840 105165.406 1518045.406 109097.324 25 WAG 54223.016 819 110084.032 1453244.032 113917.652 26 WAG+I 54137.313 820 109914.626 1456354.626 113752.927 27 WAG+G4 52671.634 820 106983.268 1453423.268 110821.569 28 WAG+I+G4 52656.142 821 106954.283 1456678.283 110797.265 29 WAG+F 54190.445 838 110056.889 1516220.889 113979.445 30 WAG+F+I 54109.354 839 109896.708 1519416.708 113823.945 31 WAG+F+G4 52646.709 839 106971.418 1516491.418 110898.655 32 WAG+F+I+G4 52632.272 840 106944.545 1519824.545 110876.463 33 cpREV 55116.469 819 111870.939 1455030.939 115704.559 34 cpREV+I 54972.659 820 111585.319 1458025.319 115423.620 35 cpREV+G4 53169.743 820 107979.487 1454419.487 111817.788 36 cpREV+I+G4 53143.907 821 107929.815 1457653.815 111772.796 37 cpREV+F 55369.007 838 112414.014 1518578.014 116336.571 38 cpREV+F+I 55228.432 839 112134.863 1521654.863 116062.100 39 cpREV+F+G4 53416.956 839 108511.913 1518031.913 112439.150 40 cpREV+F+I+G4 53393.539 840 108467.077 1521347.077 112398.995 41 mtREV 57421.817 819 116481.635 1459641.635 120315.255 42 mtREV+I 57310.551 820 116261.102 1462701.102 120099.403 43 mtREV+G4 55117.907 820 111875.813 1458315.813 115714.114 44 mtREV+I+G4 55103.085 821 111848.170 1461572.170 115691.152 45 mtREV+F 55467.856 838 112611.711 1518775.711 116534.267 46 mtREV+F+I 55354.159 839 112386.319 1521906.319 116313.556 47 mtREV+F+G4 53470.584 839 108619.168 1518139.168 112546.405 48 mtREV+F+I+G4 53464.331 840 108608.661 1521488.661 112540.579 49 rtREV 55560.273 819 112758.545 1455918.545 116592.165 50 rtREV+I 55405.879 820 112451.758 1458891.758 116290.059 51 rtREV+G4 53635.460 820 108910.921 1455350.921 112749.222 52 rtREV+I+G4 53607.797 821 108857.595 1458581.595 112700.576 53 rtREV+F 55390.504 838 112457.008 1518621.008 116379.564 54 rtREV+F+I 55243.163 839 112164.325 1521684.325 116091.562 55 rtREV+F+G4 53528.070 839 108734.141 1518254.141 112661.378 56 rtREV+F+I+G4 53514.262 840 108708.524 1521588.524 112640.442 57 mtART 61022.395 819 123682.790 1466842.790 127516.410 58 mtART+I 60751.028 820 123142.057 1469582.057 126980.358 59 mtART+G4 57345.734 820 116331.469 1462771.469 120169.769 60 mtART+I+G4 57327.440 821 116296.881 1466020.881 120139.863 61 mtART+F 58201.285 838 118078.570 1524242.570 122001.126 62 mtART+F+I 57975.395 839 117628.790 1527148.790 121556.028 63 mtART+F+G4 55261.021 839 112200.042 1521720.042 116127.279 64 mtART+F+I+G4 55241.944 840 112163.888 1525043.888 116095.806 65 mtZOA 58172.011 819 117982.022 1461142.022 121815.642 66 mtZOA+I 57927.719 820 117495.439 1463935.439 121333.740 67 mtZOA+G4 55135.094 820 111910.189 1458350.189 115748.490 68 mtZOA+I+G4 55114.318 821 111870.636 1461594.636 115713.618 69 mtZOA+F 56461.652 838 114599.304 1520763.304 118521.860 70 mtZOA+F+I 56252.023 839 114182.046 1523702.046 118109.283 71 mtZOA+F+G4 54011.407 839 109700.814 1519220.814 113628.051 72 mtZOA+F+I+G4 53989.748 840 109659.495 1522539.495 113591.413 73 VT 54154.608 819 109947.217 1453107.217 113780.837 74 VT+I 54041.926 820 109723.852 1456163.852 113562.152 75 VT+G4 52642.620 820 106925.240 1453365.240 110763.541 76 VT+I+G4 52607.321 821 106856.641 1456580.641 110699.623 77 VT+F 54161.221 838 109998.442 1516162.442 113920.998 78 VT+F+I 54052.308 839 109782.615 1519302.615 113709.852 79 VT+F+G4 52659.225 839 106996.450 1516516.450 110923.687 80 VT+F+I+G4 52636.943 840 106953.886 1519833.886 110885.804 81 LG 54817.134 819 111272.269 1454432.269 115105.889 82 LG+I 54684.042 820 111008.083 1457448.083 114846.384 83 LG+G4 53001.013 820 107642.026 1454082.026 111480.326 84 LG+I+G4 52964.384 821 107570.769 1457294.769 111413.751 85 LG+F 54712.416 838 111100.833 1517264.833 115023.389 86 LG+F+I 54584.842 839 110847.685 1520367.685 114774.922 87 LG+F+G4 52941.632 839 107561.265 1517081.265 111488.502 88 LG+F+I+G4 52907.453 840 107494.906 1520374.906 111426.824 89 DCMut 54527.658 819 110693.317 1453853.317 114526.937 90 DCMut+I 54455.499 820 110550.998 1456990.998 114389.298 91 DCMut+G4 52915.930 820 107471.860 1453911.860 111310.161 92 DCMut+I+G4 52900.880 821 107443.760 1457167.760 111286.742 93 DCMut+F 54262.363 838 110200.726 1516364.726 114123.282 94 DCMut+F+I 54192.748 839 110063.497 1519583.497 113990.734 95 DCMut+F+G4 52689.241 839 107056.482 1516576.482 110983.719 96 DCMut+F+I+G4 52674.985 840 107029.970 1519909.970 110961.888 97 PMB 54893.395 819 111424.789 1454584.789 115258.409 98 PMB+I 54804.324 820 111248.648 1457688.648 115086.949 99 PMB+G4 53415.791 820 108471.582 1454911.582 112309.883 100 PMB+I+G4 53400.566 821 108443.133 1458167.133 112286.115 101 PMB+F 54833.784 838 111343.568 1517507.568 115266.124 102 PMB+F+I 54747.607 839 111173.214 1520693.214 115100.451 103 PMB+F+G4 53378.648 839 108435.295 1517955.295 112362.532 104 PMB+F+I+G4 53363.427 840 108406.855 1521286.855 112338.773 105 HIVb 54480.024 819 110598.048 1453758.048 114431.668 106 HIVb+I 54378.262 820 110396.524 1456836.524 114234.825 107 HIVb+G4 52545.428 820 106730.856 1453170.856 110569.157 108 HIVb+I+G4 52521.372 821 106684.743 1456408.743 110527.725 109 HIVb+F 54314.574 838 110305.148 1516469.148 114227.705 110 HIVb+F+I 54205.798 839 110089.595 1519609.595 114016.832 111 HIVb+F+G4 52350.852 839 106379.703 1515899.703 110306.940 112 HIVb+F+I+G4 52325.326 840 106330.651 1519210.651 110262.569 113 HIVw 55811.076 819 113260.151 1456420.151 117093.771 114 HIVw+I 55740.552 820 113121.104 1459561.104 116959.405 115 HIVw+G4 54048.411 820 109736.823 1456176.823 113575.124 116 HIVw+I+G4 54032.179 821 109706.359 1459430.359 113549.341 117 HIVw+F 54757.597 838 111191.195 1517355.195 115113.751 118 HIVw+F+I 54676.475 839 111030.950 1520550.950 114958.187 119 HIVw+F+G4 52959.978 839 107597.956 1517117.956 111525.194 120 HIVw+F+I+G4 52941.372 840 107562.745 1520442.745 111494.663 121 JTTDCMut 53318.679 819 108275.358 1451435.358 112108.978 122 JTTDCMut+I 53220.881 820 108081.762 1454521.762 111920.063 123 JTTDCMut+G4 51749.192 820 105138.385 1451578.385 108976.686 124 JTTDCMut+I+G4 51728.810 821 105099.620 1454823.620 108942.602 125 JTTDCMut+F 53349.602 838 108375.205 1514539.205 112297.761 126 JTTDCMut+F+I 53251.521 839 108181.043 1517701.043 112108.280 127 JTTDCMut+F+G4 51789.615 839 105257.230 1514777.230 109184.467 128 JTTDCMut+F+I+G4 51766.215 840 105212.430 1518092.430 109144.348 129 FLU 54555.754 819 110749.507 1453909.507 114583.127 130 FLU+I 54512.782 820 110665.563 1457105.563 114503.864 131 FLU+G4 52787.805 820 107215.611 1453655.611 111053.911 132 FLU+I+G4 52778.142 821 107198.283 1456922.283 111041.265 133 FLU+F 53955.459 838 109586.917 1515750.917 113509.474 134 FLU+F+I 53911.843 839 109501.686 1519021.686 113428.923 135 FLU+F+G4 52153.201 839 105984.403 1515504.403 109911.640 136 FLU+F+I+G4 52143.529 840 105967.057 1518847.057 109898.975 137 Blosum62 55245.713 819 112129.426 1455289.426 115963.046 138 Blosum62+I 55149.485 820 111938.971 1458378.971 115777.271 139 Blosum62+G4 53724.285 820 109088.569 1455528.569 112926.870 140 Blosum62+I+G4 53706.383 821 109054.766 1458778.766 112897.748 141 Blosum62+F 55073.915 838 111823.830 1517987.830 115746.386 142 Blosum62+F+I 54980.308 839 111638.616 1521158.616 115565.853 143 Blosum62+F+G4 53565.747 839 108809.495 1518329.495 112736.732 144 Blosum62+F+I+G4 53547.093 840 108774.185 1521654.185 112706.103 Akaike Information Criterion: JTT+I+G4 Corrected Akaike Information Criterion: JTT Bayesian Information Criterion: JTT+I+G4 Best-fit model: JTT+I+G4 chosen according to BIC CPU time for model selection: 2027.910 seconds. Generating 1000 samples for ultrafast bootstrap (seed: 313854)... NOTE: 181 MB RAM is required! Estimate model parameters (epsilon = 0.100) Testing with init. pinv = 0.000 / init. alpha = 1.000 Est. p_inv: 0.008 / Est. gamma shape: 1.394 / Logl: -51687.961 Testing with init. pinv = 0.028 / init. alpha = 1.000 Est. p_inv: 0.009 / Est. gamma shape: 1.397 / Logl: -51688.003 Testing with init. pinv = 0.056 / init. alpha = 1.000 Est. p_inv: 0.009 / Est. gamma shape: 1.396 / Logl: -51687.976 Testing with init. pinv = 0.084 / init. alpha = 1.000 Est. p_inv: 0.009 / Est. gamma shape: 1.397 / Logl: -51687.989 Testing with init. pinv = 0.112 / init. alpha = 1.000 Est. p_inv: 0.009 / Est. gamma shape: 1.396 / Logl: -51687.976 Testing with init. pinv = 0.140 / init. alpha = 1.000 Est. p_inv: 0.009 / Est. gamma shape: 1.396 / Logl: -51687.984 Testing with init. pinv = 0.168 / init. alpha = 1.000 Est. p_inv: 0.009 / Est. gamma shape: 1.397 / Logl: -51687.993 Testing with init. pinv = 0.196 / init. alpha = 1.000 Est. p_inv: 0.009 / Est. gamma shape: 1.397 / Logl: -51688.000 Testing with init. pinv = 0.224 / init. alpha = 1.000 Est. p_inv: 0.009 / Est. gamma shape: 1.397 / Logl: -51687.990 Testing with init. pinv = 0.252 / init. alpha = 1.000 Est. p_inv: 0.009 / Est. gamma shape: 1.397 / Logl: -51687.997 Best p_inv: 0.008 / best gamma shape: 1.394 / Logl: -51687.961 Parameters optimization took 74.016 sec -------------------------------------------------------------------- | INITIALIZING CANDIDATE TREE SET | -------------------------------------------------------------------- Computing ML distances based on estimated model parameters... 70.484 sec Computing BIONJ tree... 0.264 seconds Log-likelihood of BIONJ tree: -52762.726 Generating 98 parsimony trees... 32.322 seconds 100 distinct starting trees Computing log-likelihood of 100 initial trees ... 62.907 seconds Optimizing top 20 initial trees with NNI... Iteration 1 / LogL: -51559.835 / Time: 0h:14m:11s Estimate model parameters (epsilon = 0.100) BETTER TREE FOUND at iteration 1: -51559.538 Iteration 2 / LogL: -51518.506 / Time: 0h:14m:24s Estimate model parameters (epsilon = 0.100) BETTER TREE FOUND at iteration 2: -51518.056 Iteration 3 / LogL: -51599.080 / Time: 0h:14m:32s Iteration 4 / LogL: -51549.569 / Time: 0h:14m:44s Iteration 5 / LogL: -51513.894 / Time: 0h:14m:56s Estimate model parameters (epsilon = 0.100) BETTER TREE FOUND at iteration 5: -51513.365 Iteration 6 / LogL: -51514.751 / Time: 0h:15m:11s Iteration 7 / LogL: -51524.418 / Time: 0h:15m:22s Iteration 8 / LogL: -51539.097 / Time: 0h:15m:33s Iteration 9 / LogL: -51516.837 / Time: 0h:15m:43s Iteration 10 / LogL: -51526.666 / Time: 0h:15m:57s Iteration 11 / LogL: -51537.838 / Time: 0h:16m:10s Iteration 12 / LogL: -51530.450 / Time: 0h:16m:23s Iteration 13 / LogL: -51502.318 / Time: 0h:16m:37s Estimate model parameters (epsilon = 0.100) BETTER TREE FOUND at iteration 13: -51501.788 Iteration 14 / LogL: -51517.914 / Time: 0h:16m:50s Iteration 15 / LogL: -51523.768 / Time: 0h:17m:2s Iteration 16 / LogL: -51533.008 / Time: 0h:17m:12s Iteration 17 / LogL: -51508.038 / Time: 0h:17m:25s Iteration 18 / LogL: -51535.458 / Time: 0h:17m:35s Iteration 19 / LogL: -51531.158 / Time: 0h:17m:42s Iteration 20 / LogL: -51521.459 / Time: 0h:17m:51s Average CPU time for 1 NNI search: 35.204 Finish initializing candidate tree set. Number of distinct locally optimal trees: 20 Current best tree score: -51501.788 / CPU time: 937.634 -------------------------------------------------------------------- | OPTIMIZING CANDIDATE TREE SET | -------------------------------------------------------------------- Iteration 30 / LogL: -51523.042 / Time: 0h:18m:52s (0h:19m:52s left) Iteration 40 / LogL: -51506.033 / Time: 0h:19m:59s (0h:14m:26s left) Iteration 50 / LogL: -51557.744 / Time: 0h:21m:0s (0h:10m:40s left) Log-likelihood cutoff on original alignment: -51578.782 Iteration 60 / LogL: -51534.787 / Time: 0h:22m:5s (0h:7m:52s left) Iteration 70 / LogL: -51527.695 / Time: 0h:23m:7s (0h:5m:33s left) Iteration 80 / LogL: -51510.347 / Time: 0h:24m:6s (0h:3m:32s left) Iteration 90 / LogL: -51534.311 / Time: 0h:25m:5s (0h:1m:46s left) Iteration 100 / LogL: -51581.043 / Time: 0h:26m:3s (0h:0m:9s left) Log-likelihood cutoff on original alignment: -51578.782 NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.996 TREE SEARCH COMPLETED AFTER 101 ITERATIONS / Time: 0h:26m:10s -------------------------------------------------------------------- | FINALIZING TREE SEARCH | -------------------------------------------------------------------- Performs final model parameters optimization Estimate model parameters (epsilon = 0.010) 1. Initial log-likelihood: -51501.788 2. Current log-likelihood: -51501.741 Optimal log-likelihood: -51501.726 Proportion of invariable sites: 0.008 Gamma shape alpha: 1.418 Parameters optimization took 2 rounds (1.505 sec) BEST SCORE FOUND : -51501.726 Creating bootstrap support values... Split supports printed to NEXUS file Alineamiento_AA_DAN_21_FFTNSI.fasta.splits.nex Total tree length: 96.781 Total number of iterations: 101 CPU time used for tree search: 2748.328 sec (0h:45m:48s) Wall-clock time used for tree search: 821.054 sec (0h:13m:41s) Total CPU time used: 5114.111 sec (1h:25m:14s) Total wall-clock time used: 1574.288 sec (0h:26m:14s) Computing bootstrap consensus tree... Reading input file Alineamiento_AA_DAN_21_FFTNSI.fasta.splits.nex... 411 taxa and 3242 splits. Consensus tree written to Alineamiento_AA_DAN_21_FFTNSI.fasta.contree Log-likelihood of consensus tree: -51478.102 Reading input trees file Alineamiento_AA_DAN_21_FFTNSI.fasta.contree Analysis results written to: IQ-TREE report: Alineamiento_AA_DAN_21_FFTNSI.fasta.iqtree Maximum-likelihood tree: Alineamiento_AA_DAN_21_FFTNSI.fasta.treefile Likelihood distances: Alineamiento_AA_DAN_21_FFTNSI.fasta.mldist Ultrafast bootstrap approximation results written to: Split support values: Alineamiento_AA_DAN_21_FFTNSI.fasta.splits.nex Consensus tree: Alineamiento_AA_DAN_21_FFTNSI.fasta.contree Screen log file: Alineamiento_AA_DAN_21_FFTNSI.fasta.log Date and Time: Wed Mar 8 11:21:07 2017