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Tissue-mimics example datasets for Icy protocols

Corinne Lorenzo; Jordi Andilla


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  <dc:creator>Corinne Lorenzo</dc:creator>
  <dc:creator>Jordi Andilla</dc:creator>
  <dc:date>2021-01-27</dc:date>
  <dc:description>This upload contains three image datasets to test the Icy protocols P1 to P3 and plugin metroloSPIM described in Andilla, J., Jorand, R., Olarte, O. et al. Imaging tissue-mimic with light sheet microscopy: A comparative guideline. Sci Rep 7, 44939 (2017). https://doi.org/10.1038/srep44939  

MCTS_H2B-FP.tif: tissue-mimics example dataset to test Icy protocol P1 – Detect tissue mimics and crop 3D sub-volume

MCTS_H2B-FP_crop.tif: crop of MCTS_H2B-FP.tif (tissue-mimics example dataset) to test Icy protocol P2 – SNR and contrast measurements 

MCTS_Beads.tif: fluorescent beads example dataset to test Icy protocol P3 – Characterize the PSF from beads in 3D </dc:description>
  <dc:identifier>https://zenodo.org/record/3903398</dc:identifier>
  <dc:identifier>10.5281/zenodo.3903398</dc:identifier>
  <dc:identifier>oai:zenodo.org:3903398</dc:identifier>
  <dc:relation>doi:10.5281/zenodo.3903397</dc:relation>
  <dc:relation>url:https://zenodo.org/communities/icy-bioimaging</dc:relation>
  <dc:rights>info:eu-repo/semantics/openAccess</dc:rights>
  <dc:rights>https://creativecommons.org/licenses/by/4.0/legalcode</dc:rights>
  <dc:subject>light-sheet microscopy, SPIM, bioimage analysis, Icy software</dc:subject>
  <dc:title>Tissue-mimics example datasets for Icy protocols</dc:title>
  <dc:type>info:eu-repo/semantics/other</dc:type>
  <dc:type>dataset</dc:type>
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