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Tissue-mimics example datasets for Icy protocols

Corinne Lorenzo; Jordi Andilla


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{
  "description": "<p>This upload contains three image datasets to test the Icy protocols P1 to P3 and plugin <a href=\"http://icy.bioimageanalysis.org/plugin/metrolospim/\">metroloSPIM</a> described in Andilla, J., Jorand, R., Olarte, O. <em>et al.</em> Imaging tissue-mimic with light sheet microscopy: A comparative guideline. <a href=\"https://www.nature.com/articles/srep44939\"><em>Sci Rep</em></a> <strong>7, </strong>44939 (2017). https://doi.org/10.1038/srep44939 &nbsp;</p>\n\n<p><strong>MCTS_H2B-FP.tif</strong>: tissue-mimics example dataset to test Icy protocol&nbsp;<a href=\"http://icy.bioimageanalysis.org/protocol/p1-detect-tissue-mimics-and-crop-3d-sub-volume/\">P1 &ndash; Detect tissue mimics and crop 3D sub-volume</a></p>\n\n<p><strong>MCTS_H2B-FP_crop.tif</strong>: crop of&nbsp;MCTS_H2B-FP.tif (tissue-mimics example dataset) to test Icy protocol&nbsp;<a href=\"http://icy.bioimageanalysis.org/protocol/p2-snr-and-contrast-measurements/\">P2 &ndash; SNR and contrast measurements</a>&nbsp;</p>\n\n<p><strong>MCTS_Beads.tif</strong>: fluorescent beads example dataset to test Icy protocol&nbsp;<a href=\"http://icy.bioimageanalysis.org/protocol/p3-characterize-the-psf-from-beads-in-3d/\">P3 &ndash; Characterize the PSF from beads in 3D</a>&nbsp;</p>", 
  "license": "https://creativecommons.org/licenses/by/4.0/legalcode", 
  "creator": [
    {
      "affiliation": "RESTORE-GOT IT Team UMR 5070-CNRS 1301-INSERM EFS Univ. Toulouse, France", 
      "@type": "Person", 
      "name": "Corinne Lorenzo"
    }, 
    {
      "affiliation": "ICFO-Institut de Ciences Fotonique, Av. Carl Friedrich Gauss, 3, Castelldefels, 08860, Barcelona, Spain", 
      "@id": "https://orcid.org/0000-0002-2516-3434", 
      "@type": "Person", 
      "name": "Jordi Andilla"
    }
  ], 
  "url": "https://zenodo.org/record/3903398", 
  "datePublished": "2021-01-27", 
  "keywords": [
    "light-sheet microscopy, SPIM, bioimage analysis, Icy software"
  ], 
  "@context": "https://schema.org/", 
  "distribution": [
    {
      "contentUrl": "https://zenodo.org/api/files/3f4de4c0-644b-4086-8495-62837373162d/MCTS_Beads.tif", 
      "encodingFormat": "tif", 
      "@type": "DataDownload"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/3f4de4c0-644b-4086-8495-62837373162d/MCTS_H2B-FP_crop.tif", 
      "encodingFormat": "tif", 
      "@type": "DataDownload"
    }, 
    {
      "contentUrl": "https://zenodo.org/api/files/3f4de4c0-644b-4086-8495-62837373162d/MCTS_H2B-FP.TIF", 
      "encodingFormat": "tif", 
      "@type": "DataDownload"
    }
  ], 
  "identifier": "https://doi.org/10.5281/zenodo.3903398", 
  "@id": "https://doi.org/10.5281/zenodo.3903398", 
  "@type": "Dataset", 
  "name": "Tissue-mimics example datasets for Icy protocols"
}
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