Dataset Open Access

Tissue-mimics example datasets for Icy protocols

Corinne Lorenzo; Jordi Andilla


JSON Export

{
  "files": [
    {
      "links": {
        "self": "https://zenodo.org/api/files/3f4de4c0-644b-4086-8495-62837373162d/MCTS_Beads.tif"
      }, 
      "checksum": "md5:af9300b0f08ea5080513e1820a40016d", 
      "bucket": "3f4de4c0-644b-4086-8495-62837373162d", 
      "key": "MCTS_Beads.tif", 
      "type": "tif", 
      "size": 247769348
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/3f4de4c0-644b-4086-8495-62837373162d/MCTS_H2B-FP_crop.tif"
      }, 
      "checksum": "md5:c7d240f88a1251377a11881b993c24f9", 
      "bucket": "3f4de4c0-644b-4086-8495-62837373162d", 
      "key": "MCTS_H2B-FP_crop.tif", 
      "type": "tif", 
      "size": 57612148
    }, 
    {
      "links": {
        "self": "https://zenodo.org/api/files/3f4de4c0-644b-4086-8495-62837373162d/MCTS_H2B-FP.TIF"
      }, 
      "checksum": "md5:2fdbd551e1211219e4fde293e10a0573", 
      "bucket": "3f4de4c0-644b-4086-8495-62837373162d", 
      "key": "MCTS_H2B-FP.TIF", 
      "type": "tif", 
      "size": 506862772
    }
  ], 
  "owners": [
    108714
  ], 
  "doi": "10.5281/zenodo.3903398", 
  "stats": {
    "version_unique_downloads": 5.0, 
    "unique_views": 11.0, 
    "views": 12.0, 
    "version_views": 12.0, 
    "unique_downloads": 5.0, 
    "version_unique_views": 11.0, 
    "volume": 1814645736.0, 
    "version_downloads": 6.0, 
    "downloads": 6.0, 
    "version_volume": 1814645736.0
  }, 
  "links": {
    "thumb250": "https://zenodo.org/api/iiif/v2/3f4de4c0-644b-4086-8495-62837373162d:dcbaf369-7a8f-422e-8fa3-1f215a345e8e:MCTS_Beads.tif/full/250,/0/default.jpg", 
    "doi": "https://doi.org/10.5281/zenodo.3903398", 
    "thumbs": {
      "10": "https://zenodo.org/record/3903398/thumb10", 
      "750": "https://zenodo.org/record/3903398/thumb750", 
      "50": "https://zenodo.org/record/3903398/thumb50", 
      "1200": "https://zenodo.org/record/3903398/thumb1200", 
      "100": "https://zenodo.org/record/3903398/thumb100", 
      "250": "https://zenodo.org/record/3903398/thumb250"
    }, 
    "conceptdoi": "https://doi.org/10.5281/zenodo.3903397", 
    "conceptbadge": "https://zenodo.org/badge/doi/10.5281/zenodo.3903397.svg", 
    "latest_html": "https://zenodo.org/record/3903398", 
    "bucket": "https://zenodo.org/api/files/3f4de4c0-644b-4086-8495-62837373162d", 
    "badge": "https://zenodo.org/badge/doi/10.5281/zenodo.3903398.svg", 
    "html": "https://zenodo.org/record/3903398", 
    "latest": "https://zenodo.org/api/records/3903398"
  }, 
  "conceptdoi": "10.5281/zenodo.3903397", 
  "created": "2021-01-27T09:26:43.158241+00:00", 
  "updated": "2021-01-28T00:27:31.019160+00:00", 
  "conceptrecid": "3903397", 
  "revision": 2, 
  "id": 3903398, 
  "metadata": {
    "access_right_category": "success", 
    "doi": "10.5281/zenodo.3903398", 
    "description": "<p>This upload contains three image datasets to test the Icy protocols P1 to P3 and plugin <a href=\"http://icy.bioimageanalysis.org/plugin/metrolospim/\">metroloSPIM</a> described in Andilla, J., Jorand, R., Olarte, O. <em>et al.</em> Imaging tissue-mimic with light sheet microscopy: A comparative guideline. <a href=\"https://www.nature.com/articles/srep44939\"><em>Sci Rep</em></a> <strong>7, </strong>44939 (2017). https://doi.org/10.1038/srep44939 &nbsp;</p>\n\n<p><strong>MCTS_H2B-FP.tif</strong>: tissue-mimics example dataset to test Icy protocol&nbsp;<a href=\"http://icy.bioimageanalysis.org/protocol/p1-detect-tissue-mimics-and-crop-3d-sub-volume/\">P1 &ndash; Detect tissue mimics and crop 3D sub-volume</a></p>\n\n<p><strong>MCTS_H2B-FP_crop.tif</strong>: crop of&nbsp;MCTS_H2B-FP.tif (tissue-mimics example dataset) to test Icy protocol&nbsp;<a href=\"http://icy.bioimageanalysis.org/protocol/p2-snr-and-contrast-measurements/\">P2 &ndash; SNR and contrast measurements</a>&nbsp;</p>\n\n<p><strong>MCTS_Beads.tif</strong>: fluorescent beads example dataset to test Icy protocol&nbsp;<a href=\"http://icy.bioimageanalysis.org/protocol/p3-characterize-the-psf-from-beads-in-3d/\">P3 &ndash; Characterize the PSF from beads in 3D</a>&nbsp;</p>", 
    "license": {
      "id": "CC-BY-4.0"
    }, 
    "title": "Tissue-mimics example datasets for Icy protocols", 
    "relations": {
      "version": [
        {
          "count": 1, 
          "index": 0, 
          "parent": {
            "pid_type": "recid", 
            "pid_value": "3903397"
          }, 
          "is_last": true, 
          "last_child": {
            "pid_type": "recid", 
            "pid_value": "3903398"
          }
        }
      ]
    }, 
    "communities": [
      {
        "id": "icy-bioimaging"
      }
    ], 
    "references": [
      "Andilla, J., Jorand, R., Olarte, O. et al. Imaging tissue-mimic with light sheet microscopy: A comparative guideline. Sci Rep 7, 44939 (2017). https://doi.org/10.1038/srep44939"
    ], 
    "keywords": [
      "light-sheet microscopy, SPIM, bioimage analysis, Icy software"
    ], 
    "publication_date": "2021-01-27", 
    "creators": [
      {
        "affiliation": "RESTORE-GOT IT Team UMR 5070-CNRS 1301-INSERM EFS Univ. Toulouse, France", 
        "name": "Corinne Lorenzo"
      }, 
      {
        "orcid": "0000-0002-2516-3434", 
        "affiliation": "ICFO-Institut de Ciences Fotonique, Av. Carl Friedrich Gauss, 3, Castelldefels, 08860, Barcelona, Spain", 
        "name": "Jordi Andilla"
      }
    ], 
    "access_right": "open", 
    "resource_type": {
      "type": "dataset", 
      "title": "Dataset"
    }, 
    "related_identifiers": [
      {
        "scheme": "doi", 
        "identifier": "10.5281/zenodo.3903397", 
        "relation": "isVersionOf"
      }
    ]
  }
}
12
6
views
downloads
All versions This version
Views 1212
Downloads 66
Data volume 1.8 GB1.8 GB
Unique views 1111
Unique downloads 55

Share

Cite as