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Tissue-mimics example datasets for Icy protocols

Corinne Lorenzo; Jordi Andilla


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  <identifier identifierType="DOI">10.5281/zenodo.3903398</identifier>
  <creators>
    <creator>
      <creatorName>Corinne Lorenzo</creatorName>
      <affiliation>RESTORE-GOT IT Team UMR 5070-CNRS 1301-INSERM EFS Univ. Toulouse, France</affiliation>
    </creator>
    <creator>
      <creatorName>Jordi Andilla</creatorName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-2516-3434</nameIdentifier>
      <affiliation>ICFO-Institut de Ciences Fotonique, Av. Carl Friedrich Gauss, 3, Castelldefels, 08860, Barcelona, Spain</affiliation>
    </creator>
  </creators>
  <titles>
    <title>Tissue-mimics example datasets for Icy protocols</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2021</publicationYear>
  <subjects>
    <subject>light-sheet microscopy, SPIM, bioimage analysis, Icy software</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2021-01-27</date>
  </dates>
  <resourceType resourceTypeGeneral="Dataset"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/3903398</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.3903397</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsPartOf">https://zenodo.org/communities/icy-bioimaging</relatedIdentifier>
  </relatedIdentifiers>
  <rightsList>
    <rights rightsURI="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;This upload contains three image datasets to test the Icy protocols P1 to P3 and plugin &lt;a href="http://icy.bioimageanalysis.org/plugin/metrolospim/"&gt;metroloSPIM&lt;/a&gt; described in Andilla, J., Jorand, R., Olarte, O. &lt;em&gt;et al.&lt;/em&gt; Imaging tissue-mimic with light sheet microscopy: A comparative guideline. &lt;a href="https://www.nature.com/articles/srep44939"&gt;&lt;em&gt;Sci Rep&lt;/em&gt;&lt;/a&gt; &lt;strong&gt;7, &lt;/strong&gt;44939 (2017). https://doi.org/10.1038/srep44939 &amp;nbsp;&lt;/p&gt;

&lt;p&gt;&lt;strong&gt;MCTS_H2B-FP.tif&lt;/strong&gt;: tissue-mimics example dataset to test Icy protocol&amp;nbsp;&lt;a href="http://icy.bioimageanalysis.org/protocol/p1-detect-tissue-mimics-and-crop-3d-sub-volume/"&gt;P1 &amp;ndash; Detect tissue mimics and crop 3D sub-volume&lt;/a&gt;&lt;/p&gt;

&lt;p&gt;&lt;strong&gt;MCTS_H2B-FP_crop.tif&lt;/strong&gt;: crop of&amp;nbsp;MCTS_H2B-FP.tif (tissue-mimics example dataset) to test Icy protocol&amp;nbsp;&lt;a href="http://icy.bioimageanalysis.org/protocol/p2-snr-and-contrast-measurements/"&gt;P2 &amp;ndash; SNR and contrast measurements&lt;/a&gt;&amp;nbsp;&lt;/p&gt;

&lt;p&gt;&lt;strong&gt;MCTS_Beads.tif&lt;/strong&gt;: fluorescent beads example dataset to test Icy protocol&amp;nbsp;&lt;a href="http://icy.bioimageanalysis.org/protocol/p3-characterize-the-psf-from-beads-in-3d/"&gt;P3 &amp;ndash; Characterize the PSF from beads in 3D&lt;/a&gt;&amp;nbsp;&lt;/p&gt;</description>
    <description descriptionType="Other">{"references": ["Andilla, J., Jorand, R., Olarte, O. et al. Imaging tissue-mimic with light sheet microscopy: A comparative guideline. Sci Rep 7, 44939 (2017). https://doi.org/10.1038/srep44939"]}</description>
  </descriptions>
</resource>
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