Dataset Open Access

Tissue-mimics example datasets for Icy protocols

Corinne Lorenzo; Jordi Andilla


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        <foaf:name>Jordi Andilla</foaf:name>
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    <dct:title>Tissue-mimics example datasets for Icy protocols</dct:title>
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    <dcat:keyword>light-sheet microscopy, SPIM, bioimage analysis, Icy software</dcat:keyword>
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    <dct:description>&lt;p&gt;This upload contains three image datasets to test the Icy protocols P1 to P3 and plugin &lt;a href="http://icy.bioimageanalysis.org/plugin/metrolospim/"&gt;metroloSPIM&lt;/a&gt; described in Andilla, J., Jorand, R., Olarte, O. &lt;em&gt;et al.&lt;/em&gt; Imaging tissue-mimic with light sheet microscopy: A comparative guideline. &lt;a href="https://www.nature.com/articles/srep44939"&gt;&lt;em&gt;Sci Rep&lt;/em&gt;&lt;/a&gt; &lt;strong&gt;7, &lt;/strong&gt;44939 (2017). https://doi.org/10.1038/srep44939 &amp;nbsp;&lt;/p&gt; &lt;p&gt;&lt;strong&gt;MCTS_H2B-FP.tif&lt;/strong&gt;: tissue-mimics example dataset to test Icy protocol&amp;nbsp;&lt;a href="http://icy.bioimageanalysis.org/protocol/p1-detect-tissue-mimics-and-crop-3d-sub-volume/"&gt;P1 &amp;ndash; Detect tissue mimics and crop 3D sub-volume&lt;/a&gt;&lt;/p&gt; &lt;p&gt;&lt;strong&gt;MCTS_H2B-FP_crop.tif&lt;/strong&gt;: crop of&amp;nbsp;MCTS_H2B-FP.tif (tissue-mimics example dataset) to test Icy protocol&amp;nbsp;&lt;a href="http://icy.bioimageanalysis.org/protocol/p2-snr-and-contrast-measurements/"&gt;P2 &amp;ndash; SNR and contrast measurements&lt;/a&gt;&amp;nbsp;&lt;/p&gt; &lt;p&gt;&lt;strong&gt;MCTS_Beads.tif&lt;/strong&gt;: fluorescent beads example dataset to test Icy protocol&amp;nbsp;&lt;a href="http://icy.bioimageanalysis.org/protocol/p3-characterize-the-psf-from-beads-in-3d/"&gt;P3 &amp;ndash; Characterize the PSF from beads in 3D&lt;/a&gt;&amp;nbsp;&lt;/p&gt;</dct:description>
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