3897677
doi
10.5281/zenodo.3897677
oai:zenodo.org:3897677
Alex Henrie
Spencer Mitchell
Tatsuya Sakaguchi
althonos/pronto: 2.2.0
Martin Larralde
EMBL, @zellerlab
url:https://github.com/althonos/pronto/tree/v2.2.0
info:eu-repo/semantics/openAccess
Other (Open)
Added
<ul>
<li><code>threads</code> parameter to <code>Ontology</code> constructor to control the number of
threads used by parsers supporting multithreading (OBO and OBO JSON at
the moment).</li>
<li>Deprecation warnings for suspected uses of the <code>is_a</code> pseudo-relationship
since subclasses/superclasses is now to be handled by the owner <code>Ontology</code>.</li>
<li>Support for subclass/superclass edition directly from the objects returned
by <code>Term.subclasses()</code> and <code>Term.superclasses()</code>. (<a href="https://github.com/althonos/pronto/issues/84">#84</a>)
### Changed</li>
<li>Updated <code>fastobo</code> to <code>v0.8</code>, which reduce memory footprint of identifiers,
and improves the parser speed.</li>
<li>Improved OBO parser performance using threading plus zero-copy validation
of identifiers on <code>Xref</code> instantiation.</li>
<li>Improved performance in debug mode by having the typechecker only extract
the wrapped function signature once.
### Fixed</li>
<li>OBO parser crashing on files containing <code>idspace</code> clauses in their headers.</li>
<li>Reference management issue with binary operations of <code>TermSet</code>.
### Removed</li>
<li><code>nanoset</code> depency, which was not useful anymore in Python 3.8 and caused
issues with multithreading when processing OBO frames in parallel.</li>
</ul>
Zenodo
2020-06-17
info:eu-repo/semantics/other
595572
v2.2.0
1692268271.504913
834124
md5:e5b8d8d4b516b37d606a97ee7682ff57
https://zenodo.org/records/3897677/files/althonos/pronto-v2.2.0.zip
public
https://github.com/althonos/pronto/tree/v2.2.0
Is supplement to
url
10.5281/zenodo.595572
isVersionOf
doi