immunarch-0.6.5.zip
immunomind-immunarch-9dce2ea
.Rbuildignore
265 Bytes
.github
ISSUE_TEMPLATE
bug-report.md
525 Bytes
documentation.md
320 Bytes
email-template.md
1.6 kB
feature-request.md
680 Bytes
questions-help-support.md
213 Bytes
.gitignore
86 Bytes
CONTRIBUTION.md
5.1 kB
DESCRIPTION
2.4 kB
LICENSE
34.5 kB
NAMESPACE
6.0 kB
NEWS.md
5.1 kB
R
RcppExports.R
343 Bytes
annotation.R
8.1 kB
clonality.R
7.1 kB
clustering.R
3.9 kB
data_docs.R
3.0 kB
dimensions.R
4.2 kB
diversity.R
16.7 kB
dynamics.R
6.9 kB
explore.R
4.8 kB
gene_usage.R
7.6 kB
gene_usage_analysis.R
6.0 kB
immunarch-package.R
135 Bytes
immunr_data_format.R
2.4 kB
info_theory.R
2.8 kB
io.R
59.8 kB
kmers.R
9.0 kB
overlap.R
14.3 kB
overlap_analysis.R
3.3 kB
preprocessing.R
4.7 kB
public.R
10.5 kB
sampling.R
7.7 kB
shiny.R
19.8 kB
singlecell.R
6.5 kB
spectratyping.R
4.7 kB
tools.R
14.8 kB
vis.R
104.5 kB
wip.R
4.1 kB
README.md
14.0 kB
_pkgdown.yml
4.7 kB
code-of-conduct.md
2.0 kB
data
aaproperties.rda
2.2 kB
genesegments.rda
87.6 kB
immdata.rda
1.4 MB
nonbuild
ms.rda
57.0 MB
ms_small.rda
8.6 MB
test.rda
1.5 MB
test2.rda
26.1 MB
scdata.rda
1.9 MB
fixVis
app.R
20.1 kB
immunarch-citation.xml
886 Bytes
immunr.Rproj
406 Bytes
inst
extdata
db
vdjdb.example.txt
4.5 kB
io
Sample1.tsv.gz
12.5 kB
Sample2.tsv.gz
12.8 kB
Sample3.tsv.gz
12.4 kB
Sample4.tsv.gz
12.0 kB
metadata.txt
131 Bytes
sc
flu.csv.gz
749.0 kB
man
aa_properties.Rd
368 Bytes
aa_table.Rd
365 Bytes
add_class.Rd
501 Bytes
apply_symm.Rd
1.0 kB
bunch_translate.Rd
627 Bytes
check_distribution.Rd
1.4 kB
coding.Rd
1.6 kB
dbAnnotate.Rd
2.2 kB
dbLoad.Rd
2.0 kB
dot-quant_column_choice.Rd
579 Bytes
entropy.Rd
1.4 kB
fixVis.Rd
762 Bytes
geneUsage.Rd
2.5 kB
geneUsageAnalysis.Rd
2.4 kB
gene_segments.Rd
280 Bytes
gene_stats.Rd
326 Bytes
getKmers.Rd
1.3 kB
group_from_metadata.Rd
796 Bytes
has_class.Rd
596 Bytes
immdata.Rd
576 Bytes
immunr_data_format.Rd
1.4 kB
immunr_hclust.Rd
2.6 kB
immunr_pca.Rd
2.3 kB
inc_overlap.Rd
1.9 kB
matrixdiagcopy.Rd
512 Bytes
pubRep.Rd
2.4 kB
pubRepApply.Rd
964 Bytes
pubRepFilter.Rd
884 Bytes
pubRepStatistics.Rd
774 Bytes
public_matrix.Rd
615 Bytes
repClonality.Rd
3.7 kB
repDiversity.Rd
6.7 kB
repExplore.Rd
2.5 kB
repLoad.Rd
5.5 kB
repOverlap.Rd
4.2 kB
repOverlapAnalysis.Rd
2.2 kB
repSample.Rd
3.3 kB
repSave.Rd
1.5 kB
scdata.Rd
689 Bytes
select_barcodes.Rd
2.1 kB
select_clusters.Rd
1.3 kB
set_pb.Rd
678 Bytes
spectratype.Rd
1.6 kB
split_to_kmers.Rd
1.5 kB
switch_type.Rd
880 Bytes
top.Rd
980 Bytes
trackClonotypes.Rd
4.0 kB
vis.Rd
3.0 kB
vis.immunr_chao1.Rd
3.2 kB
vis.immunr_clonal_prop.Rd
3.2 kB
vis.immunr_dynamics.Rd
2.7 kB
vis.immunr_exp_vol.Rd
3.3 kB
vis.immunr_gene_usage.Rd
1.5 kB
vis.immunr_hclust.Rd
1.1 kB
vis.immunr_inc_overlap.Rd
898 Bytes
vis.immunr_kmeans.Rd
1.6 kB
vis.immunr_kmer_table.Rd
1.2 kB
vis.immunr_mds.Rd
1.9 kB
vis.immunr_ov_matrix.Rd
1.3 kB
vis.immunr_public_repertoire.Rd
1.1 kB
vis.immunr_public_statistics.Rd
681 Bytes
vis_bar.Rd
2.8 kB
vis_box.Rd
2.7 kB
vis_circos.Rd
678 Bytes
vis_heatmap.Rd
2.0 kB
vis_heatmap2.Rd
1.2 kB
vis_hist.Rd
4.0 kB
vis_immunr_kmer_profile_main.Rd
852 Bytes
vis_public_clonotypes.Rd
1.8 kB
vis_public_frequencies.Rd
1.5 kB
vis_textlogo.Rd
1.6 kB
pkgdown
extra.css
6.6 kB
src
.gitignore
15 Bytes
RcppExports.cpp
1.6 kB
fill_functions.cpp
846 Bytes
tests
.gitignore
10 Bytes
test_parsing_data
folder
immunoseq_1.txt
992 Bytes
immunoseq_2.txt
992 Bytes
immunoseq_3.txt
992 Bytes
metadata.txt
87 Bytes
immunoseq_1.txt
1.7 kB
immunoseq_2.txt
47.8 MB
immunoseq_3.txt
15.5 MB
immunoseq_4.txt
992 Bytes
testthat
helper-preload.R
552 Bytes
test-clonality.R
421 Bytes
test-diversity.R
1.8 kB
test-dynamics.R
2.3 kB
test-explore.R
1.3 kB
test-geneusage.R
568 Bytes
test-kmers.R
1.4 kB
test-overlap.R
634 Bytes
test-pubrep.R
885 Bytes
test-spectr.R
519 Bytes
testthat.R
62 Bytes
vignettes
v1_introduction.Rmd
12.2 kB
v2_data.Rmd
8.9 kB
web_only
v10_prop.Rmd
941 Bytes
v11_db.Rmd
11.3 kB
v21_singlecell.Rmd
3.9 kB
v3_basic_analysis.Rmd
7.7 kB
v4_overlap.Rmd
5.5 kB
v5_gene_usage.Rmd
7.2 kB
v6_diversity.Rmd
3.8 kB
v7_fixvis.Rmd
1.6 kB
v8_tracking.Rmd
7.1 kB
v9_kmers.Rmd
5.3 kB