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GROMACS with CUDA-aware MPI direct GPU communication support

Alan Gray; Gaurav Garg


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{
  "publisher": "Zenodo", 
  "DOI": "10.5281/zenodo.3890247", 
  "title": "GROMACS with CUDA-aware MPI direct GPU communication support", 
  "issued": {
    "date-parts": [
      [
        2020, 
        5, 
        7
      ]
    ]
  }, 
  "abstract": "<p>This source code contains the GROMACS version used for the following manuscript:<br>\nP&aacute;ll, S., Zhmurov, A., Bauer, P., Abraham, M., Lundborg, M., Gray, A., Hess, B, &amp; Lindahl, E.. (2020). Heterogeneous Parallelization and Acceleration of Molecular Dynamics Simulations in GROMACS. The Journal of Chemical Physics, 2020</p>\n\n<p>The source code is based on the GROMACS 2021-dev code-base version 5a6ece397e36365b2b377ec4b7dbf57265b648c3<br>\nthe code modifications add CUDA-aware MPI support for halo-exchange and PME-PP communication<br>\nas well as resolve a number of related issues and limitations. Original git hash of the code is<br>\nb60021d95ebd1025ff6e235cbb381585d73533d3.</p>", 
  "author": [
    {
      "family": "Alan Gray"
    }, 
    {
      "family": "Gaurav Garg"
    }
  ], 
  "version": "2021-GPUcomm-JCP", 
  "type": "article", 
  "id": "3890247"
}
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