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getTBinR-v0.7.1.zip

seabbs-getTBinR-0ad5d42
- .Rbuildignore 307 Bytes
- .github
  - CODE_OF_CONDUCT.md 1.4 kB
  - CONTRIBUTING.md 2.2 kB
  - ISSUE_TEMPLATE
    - bug_report.md 834 Bytes
    - feature_request.md 595 Bytes
  - SUPPORT.md 1.9 kB
  - workflows
    - pkgdown.yaml 1.1 kB
- .gitignore 143 Bytes
- .travis.yml 744 Bytes
- DESCRIPTION 2.4 kB
- Dockerfile 702 Bytes
- LICENSE 35.2 kB
- Makefile 1.1 kB
- NAMESPACE 2.8 kB
- NEWS.md 12.2 kB
- R
  - available_datasets.R 831 Bytes
  - for_presentation.R 1.0 kB
  - getTBinR.R 33 Bytes
  - get_data.R 5.6 kB
  - get_data_dict.R 2.1 kB
  - get_tb_burden.R 8.4 kB
  - map_tb_burden.R 6.5 kB
  - plot_tb_burden.R 6.6 kB
  - plot_tb_burden_overview.R 4.4 kB
  - plot_tb_burden_summary.R 6.4 kB
  - prepare_df_plot.R 5.5 kB
  - render_country_report.R 2.5 kB
  - run_tb_dashboard.R 1.7 kB
  - scale_colour_who.R 1.7 kB
  - scale_fill_who.R 1.1 kB
  - search_data_dict.R 5.0 kB
  - summarise_metric.R 5.2 kB
  - summarise_tb_burden.R 13.9 kB
  - theme_who.R 2.0 kB
  - who_palettes.R 4.1 kB
  - who_shapefile.R 537 Bytes
- README.Rmd 11.0 kB
- README.md 19.8 kB
- _pkgdown.yml 2.5 kB
- appveyor.yml 885 Bytes
- binder
  - Dockerfile 260 Bytes
- cran-comments.md 171 Bytes
- data
  - available_datasets.rda 1.3 kB
  - who_shapefile.rda 216.4 kB
- data-raw
  - Makefile 275 Bytes
  - available_datasets.R 4.6 kB
  - available_datasets.rds 1.1 kB
  - get_who_shapefile.R 311 Bytes
  - package_set_up.R 890 Bytes
  - who_shapefile.Rdata 237.8 kB
- getTBinR.Rproj 343 Bytes
- inst
  - CITATION 696 Bytes
  - WORDLIST 271 Bytes
  - paper
    - paper.bib 1.0 kB
    - paper.html 742.5 kB
    - paper.md 4.1 kB
  - rmarkdown
    - country-report.Rmd 5.7 kB
  - scripts
    - generate_hex_sticker.R 1.3 kB
  - shiny
    - ExploreGlobalTB
      - server.R 5.3 kB
      - ui.R 2.2 kB
- man
  - available_datasets.Rd 1.0 kB
  - figures
    - ExampleCountryReport.png 159.4 kB
    - ExploreGlobalTB.png 851.4 kB
    - logo.png 82.6 kB
    - map-tb-incidence-eur-1.png 89.2 kB
    - plot-tb-incidence-eur-1.png 109.9 kB
    - plot-tb-incidence-eur-per-1.png 113.1 kB
    - plot-tb-incidence-uk-1.png 28.5 kB
    - plot-tb-incidence-uk-compare-1.png 30.8 kB
    - who-theme-example-1.png 28.5 kB
  - for_presentation.Rd 935 Bytes
  - getTBinR-package.Rd 1.8 kB
  - get_data.Rd 2.5 kB
  - get_data_dict.Rd 2.2 kB
  - get_tb_burden.Rd 3.6 kB
  - map_tb_burden.Rd 5.0 kB
  - plot_tb_burden.Rd 6.1 kB
  - plot_tb_burden_overview.Rd 5.3 kB
  - plot_tb_burden_summary.Rd 7.6 kB
  - prepare_df_plot.Rd 3.3 kB
  - render_country_report.Rd 1.3 kB
  - run_tb_dashboard.Rd 668 Bytes
  - scale_colour_who.Rd 2.0 kB
  - scale_fill_who.Rd 2.0 kB
  - search_data_dict.Rd 2.6 kB
  - summarise_metric.Rd 2.9 kB
  - summarise_tb_burden.Rd 5.8 kB
  - theme_who.Rd 547 Bytes
  - who_palettes.Rd 1.4 kB
  - who_shapefile.Rd 692 Bytes
- pkgnet
  - Makefile 103 Bytes
  - generate_pkgnet_report.R 733 Bytes
  - generate_pkgnet_report.html 739.8 kB
  - getTBinR_report.html 2.2 MB
- tests
  - figs
    - deps.txt 67 Bytes
    - for-presentation
      - presentation.svg 15.0 kB
    - map-tb-burden
      - annual-map.svg 253.8 kB
      - base-map.svg 252.6 kB
      - fill-map.svg 252.6 kB
      - legend-map.svg 252.6 kB
      - log-map.svg 252.1 kB
      - metric-map.svg 253.2 kB
      - no-year-map.svg 253.8 kB
    - plot-tb-burden
      - annual-plot.svg 386.5 kB
      - base-plot.svg 405.0 kB
      - log-plot.svg 404.3 kB
      - smooth-plot.svg 1.3 MB
    - plot-tb-burden-overview
      - base-overview.svg 919.6 kB
      - log-overview.svg 920.1 kB
    - plot-tb-burden-summary
      - base-summary.svg 25.0 kB
      - label-given-summary.svg 55.7 kB
      - label-summary.svg 55.9 kB
      - log-summary.svg 23.4 kB
    - scale-colour-who
      - who-color-summary.svg 7.5 kB
      - who-colour-summary.svg 7.5 kB
      - who-fill-summary.svg 13.4 kB
    - theme-who
      - who-summary.svg 10.4 kB
  - spelling.R 149 Bytes
  - test-files
    - summarise_metric
      - test-01.rds 0 Bytes
      - test-02.rds 0 Bytes
      - test-03.rds 0 Bytes
      - test-04.rds 0 Bytes
    - summarise_tb_burden
      - test-01.rds 0 Bytes
      - test-02.rds 0 Bytes
      - test-03.rds 0 Bytes
      - test-04.rds 0 Bytes
      - test-05.rds 0 Bytes
      - test-06.rds 0 Bytes
      - test-07.rds 0 Bytes
      - test-08.rds 0 Bytes
      - test-09.rds 0 Bytes
      - test-10.rds 0 Bytes
      - test-11.rds 0 Bytes
      - test-12.rds 0 Bytes
      - test-13.rds 0 Bytes
  - testthat
    - test-for_presentation.R 377 Bytes
    - test-get_data.R 1.4 kB
    - test-get_data_dict.R 704 Bytes
    - test-get_tb_burden.R 2.1 kB
    - test-map_tb_burden.R 2.5 kB
    - test-plot_tb_burden.R 1.5 kB
    - test-plot_tb_burden_overview.R 1.2 kB
    - test-plot_tb_burden_summary.R 1.4 kB
    - test-prepare_df_plot.R 4.9 kB
    - test-render_country_report.R 184 Bytes
    - test-scale_colour_who.R 914 Bytes
    - test-scale_fill_who.R 453 Bytes
    - test-search_data_dict.R 2.3 kB
    - test-summarise_metric.R 1.7 kB
    - test-summarise_tb_burden.R 6.7 kB
    - test-theme_who.R 315 Bytes
    - test-who_palettes.R 271 Bytes
  - testthat.R 60 Bytes
- vignettes
  - case_fatality_rate.Rmd 14.1 kB
  - case_study_global_trends.Rmd 7.7 kB
  - intro.Rmd 7.6 kB