Swapnil Mishra
Fabian Valka
2020-06-10
<p>This code is the exact code that was used in Flaxman, Mishra, Gandy et al. "Estimating the effects of non-pharmaceutical interventions on COVID-19 in Europe," Nature, 2020. <a href="https://www.nature.com/articles/s41586-020-2405-7">https://www.nature.com/articles/s41586-020-2405-7</a></p>
<p>To run the code from the main folder in Rstudio <code>source("base-nature.r")</code> or from the command line <code>Rscript base-nature.r</code>.</p>
<p>The code should be run in full mode to obtain results---debug mode is only to check that your environment has the required libraries; results will not be reliable as the MCMC chains will not have converged.</p>
<p>The repository with posterior draws of the model in Flaxman, Mishra, Gandy et al. "Estimating the effects of non-pharmaceutical interventions on COVID-19 in Europe," Nature, 2020. <a href="https://www.nature.com/articles/s41586-020-2405-7">https://www.nature.com/articles/s41586-020-2405-7</a> is <a href="https://github.com/ImperialCollegeLondon/covid19modelnaturedraws">here</a>.</p>
<p>This code doesn't supersede our earlier model, it is here for everyone to have direct access to code used in Flaxman, Mishra, Gandy et al. "Estimating the effects of non-pharmaceutical interventions on COVID-19 in Europe," Nature, 2020.<a href="https://www.nature.com/articles/s41586-020-2405-7">https://www.nature.com/articles/s41586-020-2405-7</a>.</p>
<p>The instructions for European, Italy, Brazil, and USA code are the same as earlier (Look at version 3, version 4, version 5, version 6).</p>
https://doi.org/10.5281/zenodo.3888697
oai:zenodo.org:3888697
Zenodo
https://github.com/ImperialCollegeLondon/covid19model/tree/v7.0
https://doi.org/10.1038/s41586-020-2405-7
https://zenodo.org/communities/covid-19
https://doi.org/10.5281/zenodo.3888696
info:eu-repo/semantics/openAccess
Other (Open)
ImperialCollegeLondon/covid19model: Nature, 2020 https://www.nature.com/articles/s41586-020-2405-7
info:eu-repo/semantics/other