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Cantemist guidelines: neoplasms morphology annotation and mapping to CIEO-3

Farré, Eulàlia; González, Gloria; Krallinger, Martin; Mas, Toni; Miranda-Escalada, Antonio


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{
  "inLanguage": {
    "alternateName": "spa", 
    "@type": "Language", 
    "name": "Spanish"
  }, 
  "description": "<p>Important: <strong>CANTEMIST corpus</strong> is available at: h<a href=\"http://zenodo.org/record/3878488\">ttps://zenodo.org/record/3878488</a></p>\n\n<p>&nbsp;</p>\n\n<p>For more information, visit <a href=\"https://temu.bsc.es/cantemist/?p=4362\">https://temu.bsc.es/cantemist/?p=4362</a></p>\n\n<p>The Cantemist corpus was manually annotated by clinical experts following the Cantemist guidelines. &nbsp;These guidelines contain rules for annotating morphology neoplasms in Spanish oncology clinical cases; as well as for mapping these annotations to<a href=\"https://eciemaps.mscbs.gob.es/ecieMaps/browser/index_o_3.html\"> CIEO-3</a> (Spanish version of <a href=\"https://www.who.int/classifications/icd/adaptations/oncology/en/\">ICD-O-3</a>).</p>\n\n<p>Guidelines were created de novo by clinical experts in three phases:</p>\n\n<ul>\n\t<li>&nbsp;First, a zero version of guidelines after the clinical experts reviewed neoplasm morphology annotations in SPACCC corpus see Codiesp guidelines(https://zenodo.org/record/3730567).</li>\n\t<li>&nbsp;Second, a stable version of guidelines was reached while annotating sample sets of Cantemist corpus iteratively until quality control was satisfactory.</li>\n\t<li>&nbsp;Third, guidelines are iteratively refined as manual annotation continues.</li>\n</ul>", 
  "license": "https://creativecommons.org/licenses/by/4.0/legalcode", 
  "creator": [
    {
      "affiliation": "Barcelona Supercomputing Center", 
      "@type": "Person", 
      "name": "Farr\u00e9, Eul\u00e0lia"
    }, 
    {
      "affiliation": "Bitac", 
      "@type": "Person", 
      "name": "Gonz\u00e1lez, Gloria"
    }, 
    {
      "affiliation": "Barcelona Supercomputing Center", 
      "@id": "https://orcid.org/0000-0002-2646-8782", 
      "@type": "Person", 
      "name": "Krallinger, Martin"
    }, 
    {
      "affiliation": "Bitac", 
      "@type": "Person", 
      "name": "Mas, Toni"
    }, 
    {
      "affiliation": "Barcelona Supercomputing Center", 
      "@id": "https://orcid.org/0000-0002-5654-001X", 
      "@type": "Person", 
      "name": "Miranda-Escalada, Antonio"
    }
  ], 
  "headline": "Cantemist guidelines: neoplasms morphology annotation and mapping to CIEO-3", 
  "image": "https://zenodo.org/static/img/logos/zenodo-gradient-round.svg", 
  "datePublished": "2020-06-05", 
  "url": "https://zenodo.org/record/3878179", 
  "version": "1.3", 
  "keywords": [
    "NLP", 
    "guidelines", 
    "annotatation", 
    "clinical", 
    "neoplasm morphology", 
    "cieo", 
    "oncology", 
    "NER", 
    "normalization", 
    "ICD-O"
  ], 
  "@context": "https://schema.org/", 
  "identifier": "https://doi.org/10.5281/zenodo.3878179", 
  "@id": "https://doi.org/10.5281/zenodo.3878179", 
  "@type": "ScholarlyArticle", 
  "name": "Cantemist guidelines: neoplasms morphology annotation and mapping to CIEO-3"
}
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