Published May 26, 2020
| Version 1.0
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Interactive visualization of the comparison between the neoplastic cells and the neural cells
- 1. Clinical Bioinformatics Area, Fundación Progreso y Salud (FPS), Hospital Virgen del Rocío, Sevilla, 41013, Spain
- 2. Unidad de Bioinformática y Bioestadística, Centro de Investigación Príncipe Felipe (CIPF), 46012, Spain
Description
Interactive visualization of the comparison between the neoplastic cells and the neural cells. In order to visualize graphs, the Hipathia Bioconductor package must be installed (https://www.bioconductor.org/packages/release/bioc/html/hipathia.html). Then, the function visualize.pathways() must be used, specifying the path to supplementary data (the file “Supplementary Figure 5”) in your computer. The function invokes a local web server that provides the functionality of the HiPathia web application. The user can navigate across the pathways and focus on specific circuits that are up- or down-activated.
Files
SupplementaryFigure5.zip
Files
(2.0 MB)
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Additional details
Funding
References
- Hidalgo, M.R., Cubuk, C., Amadoz, A., Salavert, F., Carbonell-Caballero, J. and Dopazo, J. (2017) High throughput estimation of functional cell activities reveals disease mechanisms and predicts relevant clinical outcomes. Oncotarget, 8, 5160-5178