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partition-v0.1.2.zip

USCbiostats-partition-c2e0507
- .Rbuildignore 320 Bytes
- .github
  - .gitignore 7 Bytes
  - CODE_OF_CONDUCT.md 1.4 kB
  - CONTRIBUTING.md 1.9 kB
  - ISSUE_TEMPLATE
    - issue_template.md 438 Bytes
  - workflows
    - pkgdown.yaml 617 Bytes
- .gitignore 125 Bytes
- .travis.yml 600 Bytes
- DESCRIPTION 1.9 kB
- LICENSE 63 Bytes
- LICENSE.md 1.1 kB
- NAMESPACE 1.6 kB
- NEWS.md 917 Bytes
- R
  - RcppExports.R 1.6 kB
  - data.R 1.5 kB
  - directors.R 12.5 kB
  - mappings.R 5.8 kB
  - metrics.R 10.0 kB
  - mutual_information.R 1.2 kB
  - partition.R 11.6 kB
  - partitioners.R 5.4 kB
  - permutation.R 4.2 kB
  - plot.R 11.5 kB
  - print.R 5.4 kB
  - reducers.R 16.5 kB
  - simulate_block.R 2.3 kB
  - utils-pipe.R 202 Bytes
  - utils.R 696 Bytes
- README.Rmd 8.2 kB
- README.md 9.2 kB
- _pkgdown.yml 1.3 kB
- appveyor.yml 1.4 kB
- basic_benchmarks.rds 6.5 kB
- codecov.yml 176 Bytes
- data
  - baxter_clinical.rda 3.0 kB
  - baxter_data_dictionary.rda 8.2 kB
  - baxter_family.rda 13.9 kB
  - baxter_genus.rda 21.9 kB
  - baxter_otu.rda 73.1 kB
- data-raw
  - baxter.R 4.5 kB
  - crc_baxter.metadata.txt 345.8 kB
  - crc_baxter.otu_table.100.denovo.rdp_assigned.zip 2.9 MB
- icc_kmeans_benchmarks.rds 7.8 kB
- inst
  - CITATION 1.3 kB
  - WORDLIST 484 Bytes
- man
  - all_columns_reduced.Rd 456 Bytes
  - all_done.Rd 403 Bytes
  - append_mappings.Rd 525 Bytes
  - as_director.Rd 1.3 kB
  - as_measure.Rd 1.4 kB
  - as_partition.Rd 541 Bytes
  - as_partition_helpers.Rd 691 Bytes
  - as_partition_step.Rd 1.6 kB
  - as_partitioner.Rd 1.6 kB
  - as_reducer.Rd 1.5 kB
  - assign_partition.Rd 1.3 kB
  - baxter_data.Rd 2.1 kB
  - binary_k_search.Rd 444 Bytes
  - build_next_name.Rd 450 Bytes
  - calculate_new_variable.Rd 457 Bytes
  - compare_k.Rd 728 Bytes
  - compare_metric.Rd 778 Bytes
  - corr.Rd 677 Bytes
  - direct_distance.Rd 1.4 kB
  - direct_k_cluster.Rd 1.8 kB
  - direct_measure_reduce.Rd 712 Bytes
  - figures
    - README-secret_benchmarks1-1.png 137.2 kB
    - README-secret_benchmarks2-1.png 150.5 kB
    - README-stacked_area_chart-1.png 190.3 kB
    - README-unnamed-chunk-2-1.png 190.3 kB
  - filter_reduced.Rd 857 Bytes
  - find_min_distance_variables.Rd 461 Bytes
  - fit_distance_matrix.Rd 538 Bytes
  - guess_init_k.Rd 414 Bytes
  - handle_missing.Rd 580 Bytes
  - hits.Rd 442 Bytes
  - icc.Rd 526 Bytes
  - icc_r.Rd 382 Bytes
  - is_partition.Rd 331 Bytes
  - is_partition_step.Rd 370 Bytes
  - is_partitioner.Rd 344 Bytes
  - is_same_function.Rd 419 Bytes
  - k_exhausted.Rd 433 Bytes
  - kmeans_helpers.Rd 711 Bytes
  - linear_k_search.Rd 456 Bytes
  - map_partition.Rd 1.1 kB
  - mapping_helpers.Rd 1.2 kB
  - mapping_key.Rd 1.2 kB
  - matrix_is_exhausted.Rd 457 Bytes
  - measure_icc.Rd 1.1 kB
  - measure_min_icc.Rd 1.3 kB
  - measure_min_r2.Rd 1.0 kB
  - measure_std_mutualinfo.Rd 1.1 kB
  - measure_variance_explained.Rd 1.1 kB
  - mutual_information.Rd 617 Bytes
  - part_icc.Rd 1.7 kB
  - part_kmeans.Rd 2.5 kB
  - part_minr2.Rd 1.7 kB
  - part_pc1.Rd 1.7 kB
  - part_stdmi.Rd 1.7 kB
  - partition.Rd 3.9 kB
  - partition_scores.Rd 1.0 kB
  - paste_partitioners.Rd 495 Bytes
  - permute_df.Rd 506 Bytes
  - pipe.Rd 256 Bytes
  - plot_partitions.Rd 2.8 kB
  - plot_permutation.Rd 1.1 kB
  - print_color.Rd 439 Bytes
  - print_helpers.Rd 897 Bytes
  - pull_mappings.Rd 935 Bytes
  - reduce_first_component.Rd 945 Bytes
  - reduce_kmeans.Rd 1.3 kB
  - reduce_mappings.Rd 490 Bytes
  - reduce_scaled_mean.Rd 892 Bytes
  - reduce_target.Rd 1.5 kB
  - replace_partitioner.Rd 1.1 kB
  - return_if_single.Rd 563 Bytes
  - rewind_target.Rd 376 Bytes
  - scaled_mean.Rd 552 Bytes
  - search_k.Rd 548 Bytes
  - simplify_names.Rd 394 Bytes
  - simulate_block_data.Rd 1.4 kB
  - test_permutation.Rd 1.4 kB
  - update_dist.Rd 463 Bytes
- man-roxygen
  - describe_as_partitioner.R 664 Bytes
  - describe_director.R 292 Bytes
  - describe_metric.R 316 Bytes
  - describe_partitioner.R 405 Bytes
  - describe_reducer.R 288 Bytes
  - example_header.R 183 Bytes
  - partition_param.R 49 Bytes
  - partition_step.R 99 Bytes
  - partition_step_param.R 59 Bytes
- paper
  - paper.Rmd 5.8 kB
  - paper.html 386.2 kB
  - paper.md 5.7 kB
  - references.bib 6.4 kB
- partition.Rproj 394 Bytes
- src
  - .gitignore 15 Bytes
  - Makevars 529 Bytes
  - Makevars.win 595 Bytes
  - RcppExports.cpp 9.1 kB
  - corr.cpp 1.8 kB
  - icc.cpp 1.8 kB
  - kmeans.cpp 1.9 kB
  - minr2.cpp 654 Bytes
  - pca.cpp 687 Bytes
  - reduce_partition.cpp 597 Bytes
- tests
  - spelling.R 161 Bytes
  - testthat
    - helper-df.R 35.3 kB
    - test-mappings-and-scores-work.R 1.0 kB
    - test-misc-partitioner-arguments.R 2.7 kB
    - test-partition-objects-are-well-shaped.R 2.3 kB
    - test-partitioners-helpers-work.R 1.9 kB
    - test-partitioners-reduce-correctly.R 5.5 kB
    - test-permutations-return-correctly.R 831 Bytes
    - test-plots-are-plotting.R 1.1 kB
  - testthat.R 62 Bytes
- vignettes
  - .gitignore 11 Bytes
  - extending-partition.Rmd 10.3 kB
  - introduction-to-partition.Rmd 10.1 kB