Dataset Open Access

Longitudinal high-throughput TCR repertoire profiling reveals the dynamics of T cell memory formation after mild COVID-19 infection

Anastasia A. Minervina; Ekaterina A. Komech; Aleksei Titov; Meriem Bensouda Koraichi; Elisa Rosati; Ilgar Z. Mamedov; Andre Franke; Grigory A. Efimov; Dmitriy M. Chudakov; Thierry Mora; Aleksandra M. Walczak; Yury B. Lebedev; Mikhail V. Pogorelyy


Citation Style Language JSON Export

{
  "publisher": "Zenodo", 
  "DOI": "10.5281/zenodo.3835956", 
  "title": "Longitudinal high-throughput TCR repertoire profiling reveals the dynamics of T cell memory formation after mild COVID-19 infection", 
  "issued": {
    "date-parts": [
      [
        2020, 
        5, 
        20
      ]
    ]
  }, 
  "abstract": "<p>Processed TCRbeta and TCRalpha repertoires after mild COVID-19 infection,&nbsp;see&nbsp;preprint:&nbsp;<a href=\"https://www.biorxiv.org/content/10.1101/2020.05.18.100545v1\">https://www.biorxiv.org/content/10.1101/2020.05.18.100545v1</a></p>\n\n<p>and GitHub repository:&nbsp;<a href=\"https://github.com/pogorely/Minervina_COVID\">https://github.com/pogorely/Minervina_COVID</a></p>\n\n<p>Two donors (M and W), two biological replicates of PBMC&nbsp;(F1 and F2), CD4+, CD8+, and Memory subpopulations&nbsp;for each post-infection time points (day 15, 30, 37, 45 post-infection), and pre-infection PBMC repertoires sampled in 2019 and 2018.&nbsp;</p>", 
  "author": [
    {
      "family": "Anastasia A. Minervina"
    }, 
    {
      "family": "Ekaterina A. Komech"
    }, 
    {
      "family": "Aleksei Titov"
    }, 
    {
      "family": "Meriem Bensouda Koraichi"
    }, 
    {
      "family": "Elisa Rosati"
    }, 
    {
      "family": "Ilgar Z. Mamedov"
    }, 
    {
      "family": "Andre Franke"
    }, 
    {
      "family": "Grigory A. Efimov"
    }, 
    {
      "family": "Dmitriy M. Chudakov"
    }, 
    {
      "family": "Thierry Mora"
    }, 
    {
      "family": "Aleksandra M. Walczak"
    }, 
    {
      "family": "Yury B. Lebedev"
    }, 
    {
      "family": "Mikhail V. Pogorelyy"
    }
  ], 
  "note": "Demultiplexing and UMI-consenuses were done with migec (v. 1.2.7), alignments and assembly of UMI-consensuses into clonotypes performed with mixcr (v. 2.1.11).", 
  "version": "1.0", 
  "type": "dataset", 
  "id": "3835956"
}
204
65
views
downloads
All versions This version
Views 204204
Downloads 6565
Data volume 32.9 GB32.9 GB
Unique views 168168
Unique downloads 1919

Share

Cite as