10.5281/zenodo.3829558
https://zenodo.org/records/3829558
oai:zenodo.org:3829558
Sam Neymotin
Sam Neymotin
Blake Caldwell
Blake Caldwell
ramcdougal
ramcdougal
Lucas Kasser
Lucas Kasser
Ryan Thorpe
Ryan Thorpe
stephanie-r-jones
stephanie-r-jones
Salvador Dura-Bernal
Salvador Dura-Bernal
Nikolas Evers
Nikolas Evers
@ECOMAI
jonescompneurolab/hnn: HNN Release 1.3.0
Zenodo
2020
2020-05-15
https://github.com/jonescompneurolab/hnn/tree/v1.3.0
10.5281/zenodo.1446517
v1.3.0
Other (Open)
New features:
Use hyperthreading cores in determining number of cores to run on for better performance
Windows: running with WSL is much faster than native install and via Docker
Analysis:
Dipole data files are saved with higher precision to avoid rounding errors when dipole is very small
Docker:
Shared directory is now hnn_out. This directory exists in the docker container at the same path as on the host OS (e.g. /Users/me/hnn_out) instead of /home/hnn_user/hnn_out
When loading files in GUI, there are shortcuts to hnn_out and source code directories
Improve error checking: xauthority keys, ssh keys, open ports
Refactoring of hnn_docker.sh that makes it much more robust
Stop using docker-compose. Only relies on docker to manage containers
Clean up hnn_docker.log formatting and remove special characters from output
Ubuntu:
Install script renamed to hnn-ubuntu.sh
Install script works with ubuntu 14.04, 16.04 and 18.04
Use the precompiled NEURON package instead of compiling from source
Log output from install script to ubuntu_install.log
Windows:
Renamed install script to hnn-windows.ps1
Support user names with spaces (issue #163)
Install script will work for users without admin privileges (except MPI)
Include a windows container Dockerfile that is used by Travis. It can be used to run simulations, but cannot launch GUI
Support running HNN from WSL and run tests in Travis.
Mac
Install now tested on OS versions Catalina, Mojave, Sierra, High Sierra, and El Capitan