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GMOD/Apollo: 2.6.0

Nathan Dunn; Colin Diesh; Deepak; S2KFan; Gregg Helt; Robert Buels; Monica Munoz-Torres; Yating Liu; Helena Rasche; Anthony Bretaudeau; Stephen Ficklin; Justin Reese; luke; hsiao yi; Robert Syme; childers; NehaVC; Tim Stickland; Michael Paulini; wesleyemason; rbelnap; Jun-Wei Lin; Eric Y; The Gitter Badger; Mikkel Christensen; Liam Gretton; Kim Rutherford; Cory Maughmer; Aymeric Naômé

2.6.0 Official Release

Major features include:

  • Removed popups for annotations in favor of annotator panel tabs 2334
  • Implemented gene product and field provenance annotations with evidence and GFF3 export 2371, 2234, 2312, 2424
  • Added GO Annotations to GFF3 export and extended to transcript 2400
  • loadLink can take name of gene in evidence (if JBrowse names have been processed) 2444
  • Add alias to user interface and GFF3 export 2277
  • Split out default GO Evidence Codes from ECO codes 2429

There are numerous other features, bug fixes and infrastructure changes as well. More changes can be found here: https://github.com/GMOD/Apollo/blob/develop/ChangeLog.md

Docker builds are on quay.io and docker hub:

https://quay.io/repository/gmod/apollo?tab=builds https://hub.docker.com/r/gmod/apollo Please review the documentation pages for more details: http://genomearchitect.readthedocs.io/en/latest/

Note: You can find a guide upgrading existing Apollo installations here: https://genomearchitect.readthedocs.io/en/latest/Migration.html

Report issues if found. Active mailing list (apollo@lbl.gov) and google group.

AWS EC2 Community images of Apollo 2.6.0 will be available within the N. Virginia and California regions minimally. Please request on the forum or ticketing system if more are needed.

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