There is a newer version of the record available.

Published May 4, 2020 | Version v3.3.0
Software Open

dib-lab/sourmash: version 3.2.3

Creators

  • 1. University of California, Davis
  • 2. @dib-lab - @ucdavis
  • 3. @BlockSigner
  • 4. @czbiohub
  • 5. CZ BioHub
  • 6. @dib-lab
  • 7. @pyupio
  • 8. Profile picture credit goes to XKCD
  • 9. @pqdev
  • 10. @spacetelescope

Description

Improvements:

  • add ZipStorage, support loading SBT databases from storage; .sbt.zip extensions. (#648)
  • Replace khmer.Nodegraph with rust nodegraph; ~5x speedup of SBT search & gather. (#799)

Bugs:

  • Document and (lightly) fix the LCA_Database API. (#966)
  • Fix bug when using Python 3.5 and before; refactor LCA_Database tests (#962)

Documentation:

  • Document gather abund tests a bit better; minor refactoring (#886)
  • Improve lca index error (#963)

Files

dib-lab/sourmash-v3.3.0.zip

Files (17.1 MB)

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md5:0fb836ee7673948c2bdd624645ee2ca2
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Additional details

Related works

Is supplement to
https://github.com/dib-lab/sourmash/tree/v3.3.0 (URL)