Dataset Open Access

Image tiles of TCGA-CRC-DX histological whole slide images, non-normalized, tumor only

Kather, Jakob Nikolas


Dublin Core Export

<?xml version='1.0' encoding='utf-8'?>
<oai_dc:dc xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:oai_dc="http://www.openarchives.org/OAI/2.0/oai_dc/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.openarchives.org/OAI/2.0/oai_dc/ http://www.openarchives.org/OAI/2.0/oai_dc.xsd">
  <dc:creator>Kather, Jakob Nikolas</dc:creator>
  <dc:date>2020-05-04</dc:date>
  <dc:description>These are image tiles of tumor tissue of N=604 colorectal cancer (CRC) histological whole slide images in the TCGA database. The tumor tissue was manually outlined and cut into non-overlapping tiles of 512x512 px at 0.5 µm/px. No further preprocessing was applied. No color normalization was applied. Tiles are compressed with JPEG. Each ZIP file corresponds to one whole slide image (original format: SVS).

Please cite our previous publication related to this dataset: https://www.nature.com/articles/s41591-019-0462-y

Please observe the original TCGA licenses if you use the data https://portal.gdc.cancer.gov/

Original image credit to TCGA: https://portal.gdc.cancer.gov/

Image tiles were created with QuPath v0.1.2 https://qupath.github.io

Genetic data matching these images are available at https://cbioportal.org

More information on the procedures: https://zenodo.org/record/3694994</dc:description>
  <dc:identifier>https://zenodo.org/record/3784345</dc:identifier>
  <dc:identifier>10.5281/zenodo.3784345</dc:identifier>
  <dc:identifier>oai:zenodo.org:3784345</dc:identifier>
  <dc:relation>doi:10.5281/zenodo.3784344</dc:relation>
  <dc:rights>info:eu-repo/semantics/openAccess</dc:rights>
  <dc:rights>https://creativecommons.org/licenses/by/4.0/legalcode</dc:rights>
  <dc:title>Image tiles of TCGA-CRC-DX histological whole slide images, non-normalized, tumor only</dc:title>
  <dc:type>info:eu-repo/semantics/other</dc:type>
  <dc:type>dataset</dc:type>
</oai_dc:dc>
484
15,102
views
downloads
All versions This version
Views 484484
Downloads 15,10215,102
Data volume 827.9 GB827.9 GB
Unique views 377377
Unique downloads 441441

Share

Cite as