Dataset Open Access

Image tiles of TCGA-CRC-DX histological whole slide images, non-normalized, tumor only

Kather, Jakob Nikolas


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  <identifier identifierType="DOI">10.5281/zenodo.3784345</identifier>
  <creators>
    <creator>
      <creatorName>Kather, Jakob Nikolas</creatorName>
      <givenName>Jakob Nikolas</givenName>
      <familyName>Kather</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-3730-5348</nameIdentifier>
      <affiliation>RWTH Aachen University</affiliation>
    </creator>
  </creators>
  <titles>
    <title>Image tiles of TCGA-CRC-DX histological whole slide images, non-normalized, tumor only</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2020</publicationYear>
  <dates>
    <date dateType="Issued">2020-05-04</date>
  </dates>
  <resourceType resourceTypeGeneral="Dataset"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/3784345</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.3784344</relatedIdentifier>
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  <version>v0.1</version>
  <rightsList>
    <rights rightsURI="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;These are image tiles of tumor tissue of N=604 colorectal cancer (CRC) histological whole slide images in the TCGA database. The tumor tissue was manually outlined and cut into non-overlapping tiles of 512x512 px at 0.5 &amp;micro;m/px. No further preprocessing was applied. No color normalization was applied. Tiles are compressed with JPEG. Each ZIP file corresponds to one whole slide image (original format: SVS).&lt;/p&gt;

&lt;p&gt;Please cite our previous publication related to this dataset: https://www.nature.com/articles/s41591-019-0462-y&lt;/p&gt;

&lt;p&gt;Please observe the original TCGA licenses if you use the data https://portal.gdc.cancer.gov/&lt;/p&gt;

&lt;p&gt;Original image credit to TCGA: https://portal.gdc.cancer.gov/&lt;/p&gt;

&lt;p&gt;Image tiles were created with QuPath v0.1.2 https://qupath.github.io&lt;/p&gt;

&lt;p&gt;Genetic data matching these images are available at https://cbioportal.org&lt;/p&gt;

&lt;p&gt;More information on the procedures: https://zenodo.org/record/3694994&lt;/p&gt;</description>
  </descriptions>
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