Dataset Open Access

Image tiles of TCGA-CRC-DX histological whole slide images, non-normalized, tumor only

Kather, Jakob Nikolas


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{
  "publisher": "Zenodo", 
  "DOI": "10.5281/zenodo.3784345", 
  "title": "Image tiles of TCGA-CRC-DX histological whole slide images, non-normalized, tumor only", 
  "issued": {
    "date-parts": [
      [
        2020, 
        5, 
        4
      ]
    ]
  }, 
  "abstract": "<p>These are image tiles of tumor tissue of N=604 colorectal cancer (CRC) histological whole slide images in the TCGA database. The tumor tissue was manually outlined and cut into non-overlapping tiles of 512x512 px at 0.5 &micro;m/px. No further preprocessing was applied. No color normalization was applied. Tiles are compressed with JPEG. Each ZIP file corresponds to one whole slide image (original format: SVS).</p>\n\n<p>Please cite our previous publication related to this dataset: https://www.nature.com/articles/s41591-019-0462-y</p>\n\n<p>Please observe the original TCGA licenses if you use the data https://portal.gdc.cancer.gov/</p>\n\n<p>Original image credit to TCGA: https://portal.gdc.cancer.gov/</p>\n\n<p>Image tiles were created with QuPath v0.1.2 https://qupath.github.io</p>\n\n<p>Genetic data matching these images are available at https://cbioportal.org</p>\n\n<p>More information on the procedures: https://zenodo.org/record/3694994</p>", 
  "author": [
    {
      "family": "Kather, Jakob Nikolas"
    }
  ], 
  "version": "v0.1", 
  "type": "dataset", 
  "id": "3784345"
}
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