Dataset Open Access

Eyebright species maintenance (scripts and data accompanying Becher et al., Plant Communications)

Becher, Hannes; Brown, Max R; Powell, Gavin; Metherell, Chris; Riddiford Nick J; Twyford, Alex D


JSON Export

{
  "files": [
    {
      "links": {
        "self": "https://zenodo.org/api/files/b44990d0-e73b-4250-bc16-26acebf2c4c6/Becher_data_and_code_archive.tar.gz"
      }, 
      "checksum": "md5:ee36a26fcc06b3ce47fdfa895f122b57", 
      "bucket": "b44990d0-e73b-4250-bc16-26acebf2c4c6", 
      "key": "Becher_data_and_code_archive.tar.gz", 
      "type": "gz", 
      "size": 3552860319
    }
  ], 
  "owners": [
    76685
  ], 
  "doi": "10.5281/zenodo.3774489", 
  "stats": {
    "version_unique_downloads": 159.0, 
    "unique_views": 107.0, 
    "views": 117.0, 
    "version_views": 117.0, 
    "unique_downloads": 159.0, 
    "version_unique_views": 107.0, 
    "volume": 30856591870515.0, 
    "version_downloads": 8685.0, 
    "downloads": 8685.0, 
    "version_volume": 30856591870515.0
  }, 
  "links": {
    "doi": "https://doi.org/10.5281/zenodo.3774489", 
    "conceptdoi": "https://doi.org/10.5281/zenodo.3774488", 
    "bucket": "https://zenodo.org/api/files/b44990d0-e73b-4250-bc16-26acebf2c4c6", 
    "conceptbadge": "https://zenodo.org/badge/doi/10.5281/zenodo.3774488.svg", 
    "html": "https://zenodo.org/record/3774489", 
    "latest_html": "https://zenodo.org/record/3774489", 
    "badge": "https://zenodo.org/badge/doi/10.5281/zenodo.3774489.svg", 
    "latest": "https://zenodo.org/api/records/3774489"
  }, 
  "conceptdoi": "10.5281/zenodo.3774488", 
  "created": "2020-04-29T08:52:00.352185+00:00", 
  "updated": "2020-04-29T20:20:22.640397+00:00", 
  "conceptrecid": "3774488", 
  "revision": 2, 
  "id": 3774489, 
  "metadata": {
    "access_right_category": "success", 
    "doi": "10.5281/zenodo.3774489", 
    "version": "1", 
    "language": "eng", 
    "title": "Eyebright species maintenance (scripts and data accompanying Becher et al., Plant Communications)", 
    "license": {
      "id": "CC-BY-4.0"
    }, 
    "related_identifiers": [
      {
        "scheme": "doi", 
        "identifier": "10.5281/zenodo.3774488", 
        "relation": "isVersionOf"
      }
    ], 
    "journal": {
      "title": "Plant Communications"
    }, 
    "relations": {
      "version": [
        {
          "count": 1, 
          "index": 0, 
          "parent": {
            "pid_type": "recid", 
            "pid_value": "3774488"
          }, 
          "is_last": true, 
          "last_child": {
            "pid_type": "recid", 
            "pid_value": "3774489"
          }
        }
      ]
    }, 
    "grants": [
      {
        "code": "NE/L011336/1", 
        "links": {
          "self": "https://zenodo.org/api/grants/10.13039/501100000690::NE/L011336/1"
        }, 
        "title": "Hybridization and the origin of novel taxa in Euphrasia", 
        "acronym": "", 
        "program": "NERC", 
        "funder": {
          "doi": "10.13039/501100000690", 
          "acronyms": [], 
          "name": "Research Councils UK", 
          "links": {
            "self": "https://zenodo.org/api/funders/10.13039/501100000690"
          }
        }
      }, 
      {
        "code": "NE/R010609/1", 
        "links": {
          "self": "https://zenodo.org/api/grants/10.13039/501100000690::NE/R010609/1"
        }, 
        "title": "Ecological speciation and host adaptation in a parasitic plant", 
        "acronym": "", 
        "program": "NERC", 
        "funder": {
          "doi": "10.13039/501100000690", 
          "acronyms": [], 
          "name": "Research Councils UK", 
          "links": {
            "self": "https://zenodo.org/api/funders/10.13039/501100000690"
          }
        }
      }, 
      {
        "code": "NE/N006739/1", 
        "links": {
          "self": "https://zenodo.org/api/grants/10.13039/501100000690::NE/N006739/1"
        }, 
        "title": "Evolutionary consequences of facultative plant parasitism", 
        "acronym": "", 
        "program": "NERC", 
        "funder": {
          "doi": "10.13039/501100000690", 
          "acronyms": [], 
          "name": "Research Councils UK", 
          "links": {
            "self": "https://zenodo.org/api/funders/10.13039/501100000690"
          }
        }
      }
    ], 
    "keywords": [
      "Euphrasia", 
      "k-mers", 
      "genome assembly"
    ], 
    "publication_date": "2020-04-28", 
    "creators": [
      {
        "orcid": "0000-0003-3700-2942", 
        "affiliation": "University of Edinburgh", 
        "name": "Becher, Hannes"
      }, 
      {
        "affiliation": "University of Edinburgh", 
        "name": "Brown, Max R"
      }, 
      {
        "affiliation": "Royal Botanic Garden Edinburgh", 
        "name": "Powell, Gavin"
      }, 
      {
        "affiliation": "Botanical Society of Britain and Ireland", 
        "name": "Metherell, Chris"
      }, 
      {
        "name": "Riddiford Nick J"
      }, 
      {
        "affiliation": "University of Edinburgh", 
        "name": "Twyford, Alex D"
      }
    ], 
    "access_right": "open", 
    "resource_type": {
      "type": "dataset", 
      "title": "Dataset"
    }, 
    "description": "<p><strong>This gzipped TAR ball contains data and scripts related to the study on Fair Isle eyebrights by Hannes Becher, Max R. Brown, Gavin Powell, Chris Metherell, Nick J. Riddiford, and Alex D. Twyford, submitted to Plant Communications.</strong></p>\n\n<p>Data: genome assembly of<em> Euphrasia arctica</em>, variant call files of the &quot;tetraploid&quot; and &quot;conserved&quot; sets of scaffolds, per-individual k-mer spectra, mapping depths, etc.</p>\n\n<p>Scripts: R scripts for the analysis of plant trait data, heterozygosity, ect.; an ipython notebook for the analysis of variant data, and a Mathematica notebook with the derivation of the formulae used to fit pop gen parameters to k-mer spectra.</p>"
  }
}
117
8,685
views
downloads
All versions This version
Views 117117
Downloads 8,6858,685
Data volume 30.9 TB30.9 TB
Unique views 107107
Unique downloads 159159

Share

Cite as